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Os01g0198900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0352) R2 : 0.863
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.25 (0.118) R2dE : 0.847 R2E : 0.834
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.644 (0.0741) R2dN8 : 0.0293 R2N8 : 0.0159
σ : 0.661
deviance : 201.65
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.111
memory length : 764
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.38 0.606 13.8 -0.081 4.48 2.66 2.49 -0.226 0.537 8.82 1.66 261 -- --
166.55 0.601 13.8 -0.0847 4.5 2.73 2.64 -- 0.54 8.89 1.661 261 -- --
182.13 0.629 13.8 0.0101 4.52 2.81 -- -1.14 0.552 8.93 1.524 261 -- --
189.8 0.642 13.8 0.00699 4.53 2.66 -- -- 0.529 8.79 1.345 253 -- --
341.72 0.861 14.1 -1.49 -- 5.34 -- -0.535 -0.218 -- 1.762 737 -- --
213.27 0.685 13.8 -0.23 4.84 -- 2.19 -- 0.442 6.26 -- -- -- --
224.86 0.702 13.8 -0.206 4.85 -- -- -- 0.433 6.21 -- -- -- --
200.26 0.659 13.9 0.238 -- 6.23 -- -- 0.668 -- 2.058 760 -- --
189.62 0.641 13.8 -- 4.54 2.57 -- -- 0.536 8.71 1.425 246 -- --
1446.39 1.78 13.9 -0.0731 -- -- -- -- 0.54 -- -- -- -- --
225.98 0.703 13.8 -- 4.85 -- -- -- 0.456 6.22 -- -- -- --
201.65 0.661 13.9 -- -- 6.25 -- -- 0.644 -- 2.111 764 -- --
1446.53 1.78 13.9 -- -- -- -- -- 0.548 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.84 radiation 20.0 720 < th dose dependent rect. 1 6
2 155.32 temperature 10.0 90 > th dose dependent rect. 15 12
5 156.37 radiation 20.0 720 < th dose dependent rect. 17 14
7 157.00 radiation 40.0 720 < th dose dependent rect. 16 15
8 157.08 radiation 1.0 720 < th dose dependent rect. 17 12
13 157.71 radiation 1.0 720 < th dose dependent rect. 17 15
15 158.13 temperature 10.0 10 > th dose dependent rect. 16 11
16 158.33 radiation 1.0 720 < th dose independent rect. 17 14
24 158.93 radiation 1.0 720 < th dose dependent rect. 17 20
27 159.14 radiation 10.0 720 < th dose independent rect. 1 6
29 159.20 radiation 40.0 270 < th dose dependent sin 12 NA
36 159.40 wind 1.0 720 > th dose independent rect. 3 2
39 159.54 radiation 1.0 720 < th dose independent rect. 17 21
63 160.75 temperature 30.0 30 < th dose dependent rect. 19 12
85 161.76 temperature 30.0 90 < th dose dependent rect. 17 14
113 162.58 radiation 1.0 720 < th dose independent sin 12 NA
117 162.72 radiation 1.0 720 < th dose dependent sin 12 NA
125 162.87 radiation 1.0 720 < th dose dependent rect. 17 4
140 163.45 temperature 10.0 720 > th dose dependent rect. 13 4
150 163.67 radiation 1.0 720 > th dose independent rect. 15 19
159 163.85 radiation 1.0 720 < th dose independent rect. 1 17
169 164.11 radiation 1.0 720 > th dose independent sin 11 NA
182 164.47 radiation 1.0 720 > th dose independent rect. 13 19
212 165.14 radiation 1.0 270 < th dose independent rect. 6 23
228 165.42 radiation 1.0 720 < th dose independent rect. 1 13
234 165.54 radiation 1.0 720 < th dose dependent rect. 1 19
237 165.60 radiation 1.0 270 < th dose dependent rect. 6 23
253 165.88 radiation 1.0 720 < th dose independent rect. 1 19
278 166.04 radiation 1.0 270 > th dose independent rect. 13 23
313 166.61 radiation 1.0 720 > th dose independent rect. 13 17
315 166.63 radiation 1.0 720 < th dose dependent rect. 2 16
329 166.78 radiation 1.0 720 < th dose independent rect. 17 5
341 166.93 temperature 20.0 270 > th dose independent rect. 14 11
342 166.93 radiation 1.0 720 > th dose independent rect. 4 14
390 167.45 temperature 30.0 270 < th dose dependent rect. 11 18
403 167.59 radiation 1.0 270 < th dose dependent no NA NA
435 167.93 radiation 20.0 270 < th dose independent sin 12 NA
440 168.02 radiation 1.0 270 < th dose independent no NA NA
445 168.08 radiation 1.0 270 > th dose independent no NA NA
532 168.63 radiation 1.0 720 < th dose independent rect. 1 23
537 168.72 radiation 1.0 720 < th dose dependent sin 2 NA
545 168.83 radiation 1.0 720 < th dose independent sin 2 NA
570 169.21 radiation 40.0 720 < th dose independent rect. 15 10
589 169.45 temperature 30.0 90 < th dose dependent sin 13 NA
591 169.48 radiation 20.0 720 < th dose dependent rect. 17 5
592 169.48 temperature 15.0 90 > th dose dependent rect. 15 20
611 169.62 temperature 20.0 720 > th dose independent rect. 15 2
618 169.68 radiation 10.0 720 < th dose dependent rect. 1 12
640 169.88 radiation 1.0 720 < th dose independent rect. 19 22
644 169.95 precipitation 0.1 720 < th dose independent rect. 5 5
646 169.95 precipitation 0.1 720 < th dose dependent rect. 5 5
649 169.97 temperature 15.0 30 > th dose dependent rect. 16 18
743 170.51 radiation 1.0 720 > th dose independent rect. 13 5
758 170.65 radiation 1.0 720 < th dose dependent rect. 1 23
763 170.69 radiation 1.0 720 > th dose independent rect. 7 1
780 170.86 precipitation 0.1 720 < th dose independent rect. 22 19
784 170.86 precipitation 0.1 720 < th dose dependent rect. 22 19
802 171.03 humidity 50.0 270 > th dose independent rect. 17 12
807 171.06 radiation 1.0 270 < th dose dependent rect. 23 23
812 171.10 temperature 15.0 720 > th dose independent rect. 5 14
813 171.11 radiation 1.0 720 > th dose independent sin 2 NA
814 171.12 radiation 1.0 720 > th dose independent rect. 7 10
824 171.16 radiation 1.0 720 > th dose independent rect. 4 6
842 171.23 radiation 1.0 270 > th dose dependent sin 12 NA
854 171.33 wind 9.0 720 < th dose independent rect. 5 5
856 171.35 temperature 10.0 720 > th dose independent rect. 5 5
857 171.35 atmosphere 995.0 720 > th dose independent rect. 5 5
858 171.35 atmosphere 1015.0 720 < th dose independent rect. 5 5
860 171.35 temperature 10.0 720 > th dose independent rect. 10 19
876 171.47 wind 1.0 270 > th dose independent rect. 1 12
888 171.53 humidity 50.0 720 > th dose independent rect. 5 5
889 171.53 humidity 50.0 720 > th dose independent rect. 17 5
904 171.62 wind 9.0 720 < th dose independent rect. 19 10
915 171.68 radiation 1.0 720 < th dose independent rect. 23 23
919 171.72 temperature 10.0 720 > th dose independent rect. 17 5
920 171.72 radiation 30.0 720 < th dose independent rect. 17 5
922 171.72 temperature 15.0 720 > th dose independent rect. 7 10
923 171.72 temperature 10.0 720 > th dose independent rect. 22 19
925 171.73 radiation 1.0 720 < th dose independent rect. 19 10
942 171.80 radiation 1.0 270 > th dose dependent rect. 15 18
947 171.84 temperature 10.0 720 > th dose independent rect. 19 10
948 171.84 temperature 30.0 720 < th dose independent rect. 19 10
949 171.84 humidity 50.0 720 > th dose independent rect. 19 10
950 171.84 atmosphere 995.0 720 > th dose independent rect. 19 10
955 171.84 atmosphere 1015.0 720 < th dose independent rect. 5 14
978 171.96 temperature 10.0 270 > th dose dependent rect. 13 21
980 171.98 wind 9.0 720 < th dose independent rect. 17 5
994 172.11 temperature 10.0 90 > th dose dependent sin 13 NA
998 172.14 wind 9.0 720 < th dose independent rect. 17 14