Os01g0724700 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0724700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.34	(0.0455)	R²	:	0.63
β₁	:	4.54	(0.168)	R²_dD	:	0.626	R²_D	:	0.541
β₂	:	0.914	(0.118)	R²_dC	:	0.049	R²_C	:	0.0342
β₃	:	0.838	(0.159)	R²_dE	:	0.0238	R²_E	:	-0.0184
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.375	(0.0978)	R²_dN8	:	0.0163	R²_N8	:	-0.0173
σ	:	0.85
deviance	:	333.31
__

_____

C
peak time of C	:	17
E
wheather	:	atmosphere
threshold	:	1000
memory length	:	8
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
332.2	0.856	5.33	4.64	0.918	1.09	-0.691	-1.47	0.379	17.1	1000	15	--	--
332.3	0.849	5.34	4.54	0.918	0.841	-0.682	--	0.38	17.1	1000	11	--	--
333.34	0.85	5.33	4.63	0.913	1.06	--	-1.28	0.38	17	1000	13	--	--
333.31	0.85	5.34	4.54	0.914	0.838	--	--	0.375	17	1000	8	--	--
377.1	0.904	5.33	4.61	--	1.1	--	-1.61	0.358	--	1000	20	--	--
352.27	0.88	5.33	4.4	0.896	--	-0.761	--	0.443	17.2	--	--	--	--
353.65	0.881	5.33	4.4	0.891	--	--	--	0.439	17.1	--	--	--	--
377.12	0.904	5.33	4.51	--	0.798	--	--	0.361	--	1000	11	--	--
855.18	1.37	5.46	--	0.836	0.374	--	--	-0.149	17.3	1004	14	--	--
395.25	0.929	5.32	4.37	--	--	--	--	0.417	--	--	--	--	--
864.79	1.38	5.44	--	0.814	--	--	--	-0.0512	17.3	--	--	--	--
891.62	1.4	5.45	--	--	0.337	--	--	-0.157	--	1004	14	--	--
899.45	1.4	5.43	--	--	--	--	--	-0.0684	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	318.68	atmosphere	995.0	14400	> th	dose independent	rect.	17	2
5	320.06	wind	3.0	1440	> th	dose independent	rect.	12	1
6	320.09	wind	7.0	1440	< th	dose dependent	rect.	12	1
7	320.10	wind	3.0	1440	< th	dose independent	rect.	12	1
13	320.65	wind	1.0	1440	> th	dose dependent	rect.	12	1
15	320.98	atmosphere	995.0	14400	> th	dose independent	rect.	7	12
18	321.50	atmosphere	995.0	14400	> th	dose independent	rect.	13	6
20	321.51	atmosphere	995.0	14400	> th	dose independent	rect.	10	9
21	321.59	atmosphere	995.0	14400	< th	dose independent	rect.	18	1
24	321.59	atmosphere	995.0	14400	< th	dose dependent	rect.	18	1
47	322.46	atmosphere	995.0	14400	< th	dose independent	rect.	15	4
82	322.59	atmosphere	995.0	14400	< th	dose dependent	rect.	15	4
174	324.01	atmosphere	1010.0	90	< th	dose dependent	rect.	18	5
188	324.58	atmosphere	1010.0	270	< th	dose dependent	rect.	19	1
189	324.60	humidity	90.0	1440	< th	dose dependent	rect.	5	3
190	324.74	wind	3.0	1440	> th	dose independent	rect.	10	3
196	325.03	atmosphere	1015.0	90	< th	dose dependent	rect.	18	9
197	325.11	wind	3.0	1440	< th	dose independent	rect.	10	3
199	325.11	atmosphere	1000.0	10	> th	dose independent	rect.	24	19
201	325.35	atmosphere	1015.0	90	< th	dose dependent	rect.	18	7
205	325.55	wind	3.0	1440	> th	dose independent	rect.	7	6
208	325.63	atmosphere	1000.0	10	> th	dose independent	rect.	3	16
211	325.76	humidity	70.0	1440	> th	dose dependent	rect.	5	3
212	325.83	atmosphere	1015.0	90	< th	dose dependent	rect.	18	21
215	325.89	atmosphere	1000.0	90	> th	dose independent	rect.	3	15
217	325.97	wind	3.0	1440	< th	dose independent	rect.	7	6
229	326.19	radiation	20.0	1440	> th	dose independent	rect.	6	1
244	326.22	humidity	70.0	1440	> th	dose dependent	rect.	4	6
259	326.39	atmosphere	1015.0	270	< th	dose dependent	rect.	6	17
260	326.40	atmosphere	1000.0	90	> th	dose independent	rect.	1	17
286	327.06	wind	3.0	1440	< th	dose independent	rect.	8	1
291	327.12	atmosphere	1015.0	10	< th	dose dependent	rect.	19	19
295	327.20	wind	3.0	1440	> th	dose independent	rect.	8	1
301	327.28	atmosphere	1010.0	10	< th	dose dependent	rect.	19	4
307	327.37	wind	5.0	1440	< th	dose dependent	rect.	8	6
335	327.73	radiation	20.0	1440	< th	dose independent	rect.	19	12
338	327.74	atmosphere	1015.0	10	< th	dose dependent	rect.	19	8
344	327.82	wind	5.0	90	< th	dose independent	rect.	6	21
348	327.90	humidity	80.0	1440	> th	dose independent	rect.	6	2
353	327.96	radiation	10.0	14400	< th	dose dependent	rect.	19	9
358	328.01	wind	1.0	1440	> th	dose dependent	rect.	8	5
371	328.09	humidity	80.0	14400	< th	dose dependent	rect.	4	1
385	328.23	atmosphere	1015.0	10	< th	dose dependent	rect.	7	17
386	328.23	atmosphere	1015.0	10	< th	dose dependent	rect.	19	17
387	328.25	humidity	80.0	14400	< th	dose dependent	rect.	2	1
401	328.28	atmosphere	1015.0	10	< th	dose dependent	rect.	7	19
411	328.37	humidity	80.0	1440	< th	dose independent	rect.	5	5
412	328.37	wind	1.0	1440	> th	dose dependent	rect.	8	1
413	328.37	wind	7.0	1440	< th	dose dependent	rect.	8	1
440	328.50	wind	7.0	90	> th	dose dependent	rect.	17	17
448	328.56	humidity	80.0	1440	> th	dose independent	rect.	5	4
462	328.64	atmosphere	1000.0	10	> th	dose independent	rect.	20	23
492	328.90	precipitation	0.1	14400	> th	dose independent	rect.	17	1
496	328.90	wind	7.0	90	> th	dose dependent	rect.	15	19
504	328.94	wind	1.0	270	> th	dose dependent	rect.	10	8
508	328.96	humidity	90.0	90	> th	dose dependent	rect.	23	3
527	329.09	humidity	80.0	14400	> th	dose independent	rect.	4	2
541	329.12	humidity	80.0	1440	< th	dose independent	rect.	6	2
555	329.23	wind	5.0	270	< th	dose independent	rect.	6	17
565	329.27	atmosphere	1005.0	90	< th	dose dependent	rect.	18	20
570	329.33	humidity	70.0	270	> th	dose dependent	rect.	5	20
573	329.34	wind	9.0	270	< th	dose dependent	rect.	5	20
576	329.35	atmosphere	1005.0	10	< th	dose dependent	rect.	19	20
579	329.38	humidity	80.0	14400	< th	dose independent	rect.	4	1
606	329.51	wind	9.0	270	< th	dose dependent	rect.	6	17
616	329.56	atmosphere	1000.0	10	< th	dose independent	rect.	18	21
624	329.60	atmosphere	1000.0	10	> th	dose independent	rect.	24	21
637	329.66	humidity	80.0	1440	> th	dose independent	rect.	1	11
659	329.78	atmosphere	1005.0	270	< th	dose independent	rect.	18	2
679	329.87	humidity	80.0	1440	< th	dose independent	rect.	1	11
719	330.09	atmosphere	1000.0	10	> th	dose independent	rect.	2	20
724	330.11	humidity	70.0	1440	> th	dose dependent	sin	5	NA
748	330.18	wind	7.0	270	< th	dose independent	rect.	15	23
755	330.21	radiation	20.0	1440	< th	dose independent	rect.	22	9
759	330.23	wind	3.0	1440	> th	dose independent	rect.	24	15
786	330.34	humidity	70.0	1440	> th	dose independent	rect.	9	1
800	330.40	atmosphere	1000.0	90	> th	dose independent	rect.	23	23
808	330.42	wind	3.0	1440	< th	dose independent	rect.	24	15
809	330.42	precipitation	0.1	14400	> th	dose dependent	rect.	17	1
856	330.58	wind	5.0	90	< th	dose independent	rect.	18	21
864	330.60	atmosphere	1005.0	43200	< th	dose independent	rect.	22	1
919	330.77	humidity	70.0	1440	< th	dose independent	rect.	9	2
930	330.79	wind	5.0	90	< th	dose independent	rect.	18	23
933	330.80	precipitation	0.1	14400	< th	dose independent	rect.	17	1
936	330.80	precipitation	0.1	14400	< th	dose dependent	rect.	17	1
939	330.81	humidity	80.0	270	> th	dose independent	rect.	5	20
954	330.86	radiation	40.0	1440	< th	dose independent	rect.	19	14
955	330.86	humidity	90.0	270	> th	dose dependent	rect.	22	1
970	330.91	temperature	10.0	90	> th	dose dependent	rect.	18	9
977	330.93	wind	1.0	90	> th	dose dependent	sin	19	NA