BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0188200 Os01g0188200|AK106248
         (275 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0188200  Conserved hypothetical protein                      565   e-161
Os01g0103700  Conserved hypothetical protein                      195   3e-50

>Os01g0188200 Conserved hypothetical protein
          Length = 275

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 1   SILVSYLSLFWLLKVLCILLPGRCKEGSSLTYNGCQGITSNFLSTVENAEDKFVHKIVTS 60
           SILVSYLSLFWLLKVLCILLPGRCKEGSSLTYNGCQGITSNFLSTVENAEDKFVHKIVTS
Sbjct: 1   SILVSYLSLFWLLKVLCILLPGRCKEGSSLTYNGCQGITSNFLSTVENAEDKFVHKIVTS 60

Query: 61  MVNHNISLVNQIISTGNKETIRKHTYMSSEFKMYRSMLSSMLKLLVCYPSAAAVALDKLR 120
           MVNHNISLVNQIISTGNKETIRKHTYMSSEFKMYRSMLSSMLKLLVCYPSAAAVALDKLR
Sbjct: 61  MVNHNISLVNQIISTGNKETIRKHTYMSSEFKMYRSMLSSMLKLLVCYPSAAAVALDKLR 120

Query: 121 CLIKELARLDDSDCSEVSVANVESFQTNSAREVLDTSNDIVKPVSASMKASHMGTDFDKL 180
           CLIKELARLDDSDCSEVSVANVESFQTNSAREVLDTSNDIVKPVSASMKASHMGTDFDKL
Sbjct: 121 CLIKELARLDDSDCSEVSVANVESFQTNSAREVLDTSNDIVKPVSASMKASHMGTDFDKL 180

Query: 181 KFDPAEFSSKKEVSIVHNIILWTLKFANSCHNMLSKTPSASCNLYDSIKELIECVQQNTS 240
           KFDPAEFSSKKEVSIVHNIILWTLKFANSCHNMLSKTPSASCNLYDSIKELIECVQQNTS
Sbjct: 181 KFDPAEFSSKKEVSIVHNIILWTLKFANSCHNMLSKTPSASCNLYDSIKELIECVQQNTS 240

Query: 241 LYCSTYESFHLVMCACISWYACKTRDVNQESGDSK 275
           LYCSTYESFHLVMCACISWYACKTRDVNQESGDSK
Sbjct: 241 LYCSTYESFHLVMCACISWYACKTRDVNQESGDSK 275



>Os01g0103700 Conserved hypothetical protein
          Length = 521

 Score =  195 bits (495), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 93/104 (89%)

Query: 170 ASHMGTDFDKLKFDPAEFSSKKEVSIVHNIILWTLKFANSCHNMLSKTPSASCNLYDSIK 229
           ASHMG DFDKLKFDP EFSSKKEV IV NIIL TLKFAN+CHNMLSKTP ASCNLYD IK
Sbjct: 2   ASHMGADFDKLKFDPTEFSSKKEVFIVRNIILSTLKFANTCHNMLSKTPGASCNLYDRIK 61

Query: 230 ELIECVQQNTSLYCSTYESFHLVMCACISWYACKTRDVNQESGD 273
           ELIECVQQN S YCSTYE FHL+MCACISWYACKTRD NQESGD
Sbjct: 62  ELIECVQQNASQYCSTYEFFHLIMCACISWYACKTRDGNQESGD 105



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,263,883
Number of extensions: 286035
Number of successful extensions: 744
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 744
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)