BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0183800 Os01g0183800|AK106385
         (365 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0183800  Protein of unknown function DUF295 family protein   723   0.0  
Os03g0708200  Protein of unknown function DUF295 family protein   125   5e-29
Os08g0426100                                                       69   4e-12
Os11g0593700  Protein of unknown function DUF295 family protein    67   2e-11

>Os01g0183800 Protein of unknown function DUF295 family protein
          Length = 365

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/365 (95%), Positives = 349/365 (95%)

Query: 1   MSAKVPRRLEANSVGMADWAGLQTDILGVIVKKLAVPDYLRFRAVCTSWNHLCRDVFNCP 60
           MSAKVPRRLEANSVGMADWAGLQTDILGVIVKKLAVPDYLRFRAVCTSWNHLCRDVFNCP
Sbjct: 1   MSAKVPRRLEANSVGMADWAGLQTDILGVIVKKLAVPDYLRFRAVCTSWNHLCRDVFNCP 60

Query: 61  RIDPWLMLPTNALNDSKFLCVPERKNQTIRLPSTVTIFGSTWIPVGSSHGWLIFYSPSHG 120
           RIDPWLMLPTNALNDSKFLCVPERKNQTIRLPSTVTIFGSTWIPVGSSHGWLIFYSPSHG
Sbjct: 61  RIDPWLMLPTNALNDSKFLCVPERKNQTIRLPSTVTIFGSTWIPVGSSHGWLIFYSPSHG 120

Query: 121 TMQLVNPISGMQFNLPPIGRRAFSKAMLLDMNDTNFTVAVILRDQKGYKVTRKGSNSWSS 180
           TMQLVNPISGMQFNLPPIGRRAFSKAMLLDMNDTNFTVAVILRDQKGYKVTRKGSNSWSS
Sbjct: 121 TMQLVNPISGMQFNLPPIGRRAFSKAMLLDMNDTNFTVAVILRDQKGYKVTRKGSNSWSS 180

Query: 181 VESKHDLVDIFKHRRQLYTVDIYGTVQLWAEPPRSWPDEDAPQVNDPYHNLIHYPHQHGK 240
           VESKHDLVDIFKHRRQLYTVDIYGTVQLWAEPPRSWPDEDAPQVNDPYHNLIHYPHQHGK
Sbjct: 181 VESKHDLVDIFKHRRQLYTVDIYGTVQLWAEPPRSWPDEDAPQVNDPYHNLIHYPHQHGK 240

Query: 241 LNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVDNIGDFALFVSYYSSVCYRAKD 300
           LNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVDNIGDFALFVSYYSSVCYRAKD
Sbjct: 241 LNCLVESPAGDLMRVKRQSNDKFVVWILDKGTFSWEKVDNIGDFALFVSYYSSVCYRAKD 300

Query: 301 HLNLKSNCVYFIDSYSNLCAFNLENRTKELVXXXXXXXXXXXXXXXXVRRRPEGQRYMWL 360
           HLNLKSNCVYFIDSYSNLCAFNLENRTKELV                VRRRPEGQRYMWL
Sbjct: 301 HLNLKSNCVYFIDSYSNLCAFNLENRTKELVEALEPAHAHGHPEPHAVRRRPEGQRYMWL 360

Query: 361 IPSLR 365
           IPSLR
Sbjct: 361 IPSLR 365



>Os03g0708200 Protein of unknown function DUF295 family protein
          Length = 398

 Score =  125 bits (314), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 171/373 (45%), Gaps = 66/373 (17%)

Query: 16  MADWAGLQTDILGVIVKKLAVPDYLRFRAVCTSWNHLCR---DVFNCPRID-PWLMLPTN 71
           M+ W+G+  D+L ++V +L   D LRFRAVC SW        D    PR D PWL+LP +
Sbjct: 1   MSGWSGIHDDMLLLVVGRLPALDLLRFRAVCASWRAAAAIFVDGRGRPRPDRPWLLLPAD 60

Query: 72  AL---NDSKFLCVPERKNQTIRLPSTVTIFGS-TWIPVGSSHGWLIFYSPSHGTMQLVNP 127
           A    +  +F+   +R+   + LP+ +   G   ++P+GSS G +I  +   G M L++P
Sbjct: 61  APDPDDGCRFVVSRDREVPVVALPARLGRDGGRGFVPLGSSRG-VIVAADDRGEMHLLDP 119

Query: 128 ISGMQFNLPPI--------------------GRRAFS-------KAMLLDMNDTNFTVAV 160
           ++G +  LPP+                    G    S       KA+ +   D    V V
Sbjct: 120 VTGKRRALPPVISLPLVDGVEGGPAGLNVRHGGGTVSRIDGLIHKAVPVPAPDGGLLVVV 179

Query: 161 ILRD---QKGYKVTRKGSNSWSSVE--SKHDLVDIFKHRRQLYTVDIYGTVQLWAEPPRS 215
           I R    +  +   R G  +W SV+  S   +VD+  HR QLY    YG V  +A P   
Sbjct: 180 IYRQVHHRNQWATARPGDRAWKSVKPTSIPAVVDVAVHRGQLYANTRYGMV--YAFPELR 237

Query: 216 WPDEDAPQVNDPYHNLIHYPHQHGKLNCLVESPAGD------LMRVK-----------RQ 258
                +P++     ++   P+ + + + LVESP G       LM+V+             
Sbjct: 238 GLGSASPEI---IPSVTRRPNAYVERSFLVESPPGSAGGRRGLMQVELLRPVAASGGGED 294

Query: 259 SNDKFVVWILDKGTFSWEKVDNIGDFALFVSYYSSVCYRAKDHLNLKSNCVYF---IDSY 315
             + FVV +LD+   +WE+ D+IGD A+ V    +V    ++   L+ + VYF   +   
Sbjct: 295 EEEGFVVRVLDECGETWEEADDIGDVAVLVDASGAVAASTRECPGLRPSTVYFAVDLAGE 354

Query: 316 SNLCAFNLENRTK 328
           + +CA++L    K
Sbjct: 355 TRVCAYSLAAAAK 367



>Os08g0426100 
          Length = 324

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 24/166 (14%)

Query: 18  DWAGLQTDILGVIVKKLAVPDYLRFRAVCTSWNHLC-----RDVFNCPRIDPWLMLPT-- 70
           DW+ L  D++  ++ KL +PD++R  AVCT W         R V++ PR    L +P   
Sbjct: 16  DWSDLLADMVDTVLCKLELPDFIRTAAVCTCWRAPALDLRRRGVYSFPRTPCLLYIPAAA 75

Query: 71  -----NALNDSKFLCVPERKNQTIRLPSTVTIFGSTWIPVGSSHGWLIFYSPSHGTMQLV 125
                ++   ++  C+ + +  T+ LP       S    VGSSHGWL+  + +   + L+
Sbjct: 76  AANGGSSTRSAELYCLADERPYTVTLPDPPIAERSI---VGSSHGWLVT-ADARSELHLL 131

Query: 126 NPISGMQFNLPPIGRRAFSKAMLLDMNDTNFTVAVILRDQKGYKVT 171
           NP +  Q  LPPI      + +L    D          D +GY+V+
Sbjct: 132 NPATREQIELPPIATLEQVRPILEAAGDGG--------DLRGYEVS 169



>Os11g0593700 Protein of unknown function DUF295 family protein
          Length = 423

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 28/140 (20%)

Query: 14  VGMADWAGLQTDILGVIVKKLAVPDYLRFRAVCTSWNHLCRDV---------------FN 58
           +G++DW+ L  DI+ V++ KL +PD L   AVC SW   C  V               ++
Sbjct: 1   MGISDWSSLPKDIVIVVMGKLEIPDLLSAGAVCASWRAACTAVRRVRFPITDKSPCLLYS 60

Query: 59  CPRIDPWLMLPTNALNDSKFLCVPERKNQTIRLPSTVTIFGSTWIPVGSSHGWLIFYSPS 118
           C   DP L    +  N++ F          +RLP        T   VGS HGW++  +  
Sbjct: 61  CEADDPDLATFYSPSNNATF---------KVRLPGPPFRRRYT---VGSDHGWIV-TADE 107

Query: 119 HGTMQLVNPISGMQFNLPPI 138
              +Q++NP+SG+Q +LPP+
Sbjct: 108 LSNLQVINPLSGVQIDLPPV 127



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,207,361
Number of extensions: 560014
Number of successful extensions: 1554
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1570
Number of HSP's successfully gapped: 4
Length of query: 365
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 263
Effective length of database: 11,709,973
Effective search space: 3079722899
Effective search space used: 3079722899
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)