BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0178200 Os01g0178200|Os01g0178200
         (333 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0178200  Protein of unknown function DUF92, transmembra...   533   e-152
Os01g0507300  Protein of unknown function DUF92, transmembra...   276   2e-74

>Os01g0178200 Protein of unknown function DUF92, transmembrane family protein
          Length = 333

 Score =  533 bits (1374), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 277/301 (92%), Positives = 277/301 (92%)

Query: 33  KSVDSTAVFVGVPAMVAHTVAGYRFAGMLLVFFFTASRMTRVGEKRKRALDPDFKEGGQR 92
           KSVDSTAVFVGVPAMVAHTVAGYRFAGMLLVFFFTASRMTRVGEKRKRALDPDFKEGGQR
Sbjct: 33  KSVDSTAVFVGVPAMVAHTVAGYRFAGMLLVFFFTASRMTRVGEKRKRALDPDFKEGGQR 92

Query: 93  NWFTFRVEASDFGSDCSRVGECGKSLERQNSYLVHTTLIGRKQVLSNSGXXXXXXXXXXX 152
           NWFTFRVEASDFGSDCSRVGECGKSLERQNSYLVHTTLIGRKQVLSNSG           
Sbjct: 93  NWFTFRVEASDFGSDCSRVGECGKSLERQNSYLVHTTLIGRKQVLSNSGIASVLVVLIAL 152

Query: 153 XTGGSDRCLDTRESSLVTALIGGVIGHYACCNGDTWSSELGILSKAEPRIITTFKRVRKG 212
            TGGSDRCLDTRESSLVTALIGGVIGHYACCNGDTWSSELGILSKAEPRIITTFKRVRKG
Sbjct: 153 VTGGSDRCLDTRESSLVTALIGGVIGHYACCNGDTWSSELGILSKAEPRIITTFKRVRKG 212

Query: 213 TNGGVTIDGLLAAAAAGFSIXXXXXXXXXXXXQCSSDVFWRQLLVIPLATAAGLCGSLID 272
           TNGGVTIDGLLAAAAAGFSI            QCSSDVFWRQLLVIPLATAAGLCGSLID
Sbjct: 213 TNGGVTIDGLLAAAAAGFSIGLTFVLLGFLTTQCSSDVFWRQLLVIPLATAAGLCGSLID 272

Query: 273 SLLGATLQYSGYCSLRKKVVGVDGPTVTRISGRNILDNNGVNVVSVFLTTLITALACVYI 332
           SLLGATLQYSGYCSLRKKVVGVDGPTVTRISGRNILDNNGVNVVSVFLTTLITALACVYI
Sbjct: 273 SLLGATLQYSGYCSLRKKVVGVDGPTVTRISGRNILDNNGVNVVSVFLTTLITALACVYI 332

Query: 333 F 333
           F
Sbjct: 333 F 333



>Os01g0507300 Protein of unknown function DUF92, transmembrane family protein
          Length = 291

 Score =  276 bits (705), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/300 (50%), Positives = 183/300 (61%), Gaps = 39/300 (13%)

Query: 34  SVDSTAVFVGVPAMVAHTVAGYRFAGMLLVFFFTASRMTRVGEKRKRALDPDFKEGGQRN 93
           S+D +    G   M  H   GYR+  ++L FFFT+S+ T++G  RKR ++ DFKEGGQRN
Sbjct: 31  SLDGSGGAAGFVVMAIHLACGYRYGALVLAFFFTSSKATKIGADRKRRIEDDFKEGGQRN 90

Query: 94  WFTFRVEASDFGSDCSRVGECGKSLERQNSYLVHTTLIGRKQVLSNSGXXXXXXXXXXXX 153
           W                                        QVL+NS             
Sbjct: 91  WI---------------------------------------QVLANSLIATILVIILATM 111

Query: 154 TGGSDRCLDTRESSLVTALIGGVIGHYACCNGDTWSSELGILSKAEPRIITTFKRVRKGT 213
           TGG D+CLD+ ES ++T +IGG+IGHY CCNGDTWSSELG+LS  +PR+ITT K VRKGT
Sbjct: 112 TGGQDQCLDSHESKVITGIIGGIIGHYCCCNGDTWSSELGVLSDEQPRLITTLKPVRKGT 171

Query: 214 NGGVTIDGLLAAAAAGFSIXXXXXXXXXXXXQCSSDVFWRQLLVIPLATAAGLCGSLIDS 273
           NGGVT+ GLLAA A G  I            +CS DV  RQLLVIP++  AGL GSLIDS
Sbjct: 172 NGGVTLQGLLAATAGGLIIGLTFVFVGLLTVECSFDVALRQLLVIPISATAGLLGSLIDS 231

Query: 274 LLGATLQYSGYCSLRKKVVGVDGPTVTRISGRNILDNNGVNVVSVFLTTLITALACVYIF 333
           +LGATLQ+SGYCS+RKKVV   GPTVT+ISG  ILDN+ VN VSV LTT +TA AC+ IF
Sbjct: 232 VLGATLQFSGYCSVRKKVVSKRGPTVTKISGMTILDNDAVNAVSVLLTTAVTAYACIRIF 291



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,231,156
Number of extensions: 344116
Number of successful extensions: 634
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 3
Length of query: 333
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 232
Effective length of database: 11,762,187
Effective search space: 2728827384
Effective search space used: 2728827384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)