BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0175100 Os01g0175100|AK071289
(138 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0175100 Kv1.4 voltage-gated K+ channel family protein 160 2e-40
Os05g0176700 Conserved hypothetical protein 75 1e-14
Os01g0104300 74 4e-14
Os05g0189200 64 3e-11
>Os01g0175100 Kv1.4 voltage-gated K+ channel family protein
Length = 138
Score = 160 bits (405), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 76/89 (85%)
Query: 50 KWWAPLLGWSGQPDYIDAQPAAREEARPNPMAAAEQRGGGGKRFGVLTEEKARQLRARMM 109
KWWAPLLGWSGQPDYIDAQPAAREEARPNPMAAAEQRGGGGKRFGVLTEEKARQLRARMM
Sbjct: 50 KWWAPLLGWSGQPDYIDAQPAAREEARPNPMAAAEQRGGGGKRFGVLTEEKARQLRARMM 109
Query: 110 ETESFHDCMYHXXXXXXXXXXXXXDDGKH 138
ETESFHDCMYH DDGKH
Sbjct: 110 ETESFHDCMYHSAIASRLASAAPADDGKH 138
>Os05g0176700 Conserved hypothetical protein
Length = 118
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 47/77 (61%), Gaps = 18/77 (23%)
Query: 50 KWWAPLLGWSGQPDYIDAQPAAR------EEARPNPMAAAEQRGGGGKRFGVLTEEKARQ 103
KWWAPLLGWSG+ DYI+A A EAR P G LTEEKAR+
Sbjct: 43 KWWAPLLGWSGKADYIEAPAPAVVAAAEESEARRRPF------------VGGLTEEKARE 90
Query: 104 LRARMMETESFHDCMYH 120
LRARM+ETESFHD MYH
Sbjct: 91 LRARMVETESFHDAMYH 107
>Os01g0104300
Length = 126
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 42/54 (77%)
Query: 50 KWWAPLLGWSGQPDYIDAQPAAREEARPNPMAAAEQRGGGGKRFGVLTEEKARQ 103
KWWA LLGWSGQ DYI+AQP +R+EARP+ A ++ GGGKRF VL EEKA Q
Sbjct: 25 KWWASLLGWSGQADYINAQPTSRKEARPSIGNPAAEQQGGGKRFSVLMEEKAWQ 78
>Os05g0189200
Length = 68
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 39/71 (54%), Gaps = 26/71 (36%)
Query: 50 KWWAPLLGWSGQPDYIDAQPAAREEARPNPMAAAEQRGGGGKRFGVLTEEKARQLRARMM 109
KWWA LLGWSG+ DYI+A P P +EKAR+LRARM
Sbjct: 13 KWWALLLGWSGKADYIEA---------PTP-----------------AKEKARELRARMA 46
Query: 110 ETESFHDCMYH 120
ETESFHD MYH
Sbjct: 47 ETESFHDAMYH 57
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,314,000
Number of extensions: 125494
Number of successful extensions: 873
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 871
Number of HSP's successfully gapped: 4
Length of query: 138
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 48
Effective length of database: 12,336,541
Effective search space: 592153968
Effective search space used: 592153968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)