Os05g0176700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0176700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.42 | 0.528 | 12.4 | 0.216 | 0.544 | 1.29 | 0.0688 | -1.56 | 0.7 | 16.2 | 20.55 | 8 | -- | -- |
| 134 | 0.539 | 12.4 | 0.247 | 0.619 | 1.46 | 1.33 | -- | 0.71 | 14.6 | 20 | 5 | -- | -- |
| 126.43 | 0.524 | 12.4 | 0.217 | 0.546 | 1.3 | -- | -1.59 | 0.701 | 16.1 | 20.56 | 7 | -- | -- |
| 139.31 | 0.55 | 12.4 | 0.263 | 0.534 | 1.26 | -- | -- | 0.704 | 16.3 | 20.47 | 5 | -- | -- |
| 138.84 | 0.549 | 12.4 | 0.184 | -- | 1.1 | -- | -1.57 | 0.68 | -- | 20 | 5 | -- | -- |
| 161.01 | 0.595 | 12.4 | 0.192 | 1.16 | -- | -1.26 | -- | 0.697 | 22.4 | -- | -- | -- | -- |
| 167.46 | 0.606 | 12.4 | 0.243 | 1.17 | -- | -- | -- | 0.701 | 22.3 | -- | -- | -- | -- |
| 152.27 | 0.575 | 12.4 | 0.253 | -- | 1.08 | -- | -- | 0.691 | -- | 20 | 5 | -- | -- |
| 141.21 | 0.553 | 12.4 | -- | 0.523 | 1.24 | -- | -- | 0.675 | 16.5 | 20 | 5 | -- | -- |
| 250.63 | 0.74 | 12.4 | 0.261 | -- | -- | -- | -- | 0.704 | -- | -- | -- | -- | -- |
| 169.02 | 0.608 | 12.4 | -- | 1.17 | -- | -- | -- | 0.674 | 22.3 | -- | -- | -- | -- |
| 153.95 | 0.578 | 12.4 | -- | -- | 1.08 | -- | -- | 0.663 | -- | 20 | 5 | -- | -- |
| 252.43 | 0.742 | 12.4 | -- | -- | -- | -- | -- | 0.675 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.93 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 5 | 124.11 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 7 | 125.19 | radiation | 20 | 10 | < th | dose dependent | sin | 1 | NA |
| 12 | 126.25 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 13 | 126.44 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 19 | 127.06 | radiation | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 24 | 127.25 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 19 |
| 27 | 127.46 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 17 |
| 28 | 127.58 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 30 | 127.64 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 14 |
| 31 | 127.74 | radiation | 10 | 10 | < th | dose independent | sin | 1 | NA |
| 36 | 127.86 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 38 | 128.00 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 40 | 128.09 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 52 | 129.04 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 54 | 129.31 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 68 | 129.93 | radiation | 30 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 69 | 129.94 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 80 | 130.17 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 84 | 130.40 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 91 | 130.71 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 15 |
| 95 | 130.86 | radiation | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 106 | 131.26 | radiation | 20 | 10 | < th | dose independent | no | NA | NA |
| 116 | 131.50 | radiation | 20 | 10 | < th | dose independent | rect. | 15 | 23 |
| 124 | 131.76 | radiation | 20 | 10 | < th | dose independent | rect. | 23 | 21 |
| 126 | 131.80 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 136 | 132.04 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 23 |
| 137 | 132.07 | radiation | 10 | 10 | > th | dose independent | sin | 0 | NA |
| 141 | 132.12 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 7 |
| 156 | 132.58 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 159 | 132.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 173 | 132.96 | radiation | 40 | 10 | < th | dose dependent | rect. | 13 | 7 |
| 179 | 133.11 | radiation | 10 | 10 | > th | dose independent | rect. | 11 | 23 |
| 187 | 133.18 | radiation | 10 | 10 | < th | dose independent | rect. | 9 | 23 |
| 189 | 133.21 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 9 |
| 190 | 133.22 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 197 | 133.34 | radiation | 20 | 30 | < th | dose independent | rect. | 12 | 8 |
| 264 | 134.00 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 269 | 134.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 270 | 134.07 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 291 | 134.33 | radiation | 30 | 10 | < th | dose independent | rect. | 1 | 10 |
| 296 | 134.34 | radiation | 30 | 10 | < th | dose dependent | rect. | 23 | 21 |
| 318 | 134.41 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 357 | 134.77 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 360 | 134.84 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 369 | 134.93 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 409 | 135.13 | radiation | 1 | 10 | > th | dose dependent | rect. | 18 | 22 |
| 411 | 135.16 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 433 | 135.28 | radiation | 1 | 10 | > th | dose dependent | sin | 2 | NA |
| 438 | 135.37 | radiation | 1 | 10 | > th | dose dependent | rect. | 7 | 12 |
| 475 | 135.54 | humidity | 70 | 270 | > th | dose independent | rect. | 23 | 9 |
| 490 | 135.65 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 572 | 135.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 575 | 135.72 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 675 | 135.90 | radiation | 40 | 10 | < th | dose dependent | rect. | 1 | 10 |
| 720 | 136.30 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 8 |
| 725 | 136.33 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 9 |
| 762 | 136.55 | radiation | 10 | 10 | > th | dose independent | rect. | 15 | 23 |
| 766 | 136.56 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 797 | 136.72 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 799 | 136.73 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 8 |
| 813 | 136.84 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 814 | 136.84 | radiation | 20 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 821 | 136.92 | radiation | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 837 | 137.02 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 914 | 137.33 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 926 | 137.40 | temperature | 15 | 30 | > th | dose independent | rect. | 20 | 17 |
| 951 | 137.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 960 | 137.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |