BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0176700 Os05g0176700|AK071729
         (118 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15630.1  | chr3:5297188-5297511 REVERSE LENGTH=108             65   1e-11
AT1G52720.1  | chr1:19641007-19641360 FORWARD LENGTH=118           62   7e-11

>AT3G15630.1 | chr3:5297188-5297511 REVERSE LENGTH=108
          Length = 107

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 41  SGKWWAPLLGWSGKADYIXXXXXXXXXXXXXXXXXXXXFVGGLTEEKARELRARMVETES 100
           S  WWAPL G S + DY+                        LTEEKA++LR +  E  +
Sbjct: 29  SVSWWAPLFGMSSEPDYVNKTVNLESDLDKAEKRS---LRCCLTEEKAKQLRRKTAEAST 85

Query: 101 FHDAMYHSAIASRLA 115
           FHD MYHSAIASRLA
Sbjct: 86  FHDVMYHSAIASRLA 100



>AT1G52720.1 | chr1:19641007-19641360 FORWARD LENGTH=118
          Length = 117

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 40  ESGKWWAPLLGWSGKADY--IXXXXXXXXXXXXXXXXXXXXFV-GGLTEEKARELRARMV 96
           +S  WWAPL G     DY  I                    F  G  TEEKA++LR +  
Sbjct: 30  KSAAWWAPLFGLPSDPDYLNIESSCSTVNPDKTDISGSGQKFRRGCFTEEKAKQLRRKTA 89

Query: 97  ETESFHDAMYHSAIASRLA 115
           E  +FHD MYHSAIASRLA
Sbjct: 90  EASTFHDVMYHSAIASRLA 108



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.129    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,102,232
Number of extensions: 19204
Number of successful extensions: 40
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 2
Length of query: 118
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 33
Effective length of database: 8,776,209
Effective search space: 289614897
Effective search space used: 289614897
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)