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Os01g0175100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Kv1.4 voltage-gated K+ channel family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0339) R2 : 0.911
β1 : -0.806 (0.122) R2dD : 0.00905 R2D : 0.0052
β2 : 3.7 (0.157) R2dC : 0.404 R2C : 0.777
β3 : -2.2 (0.17) R2dE : 0.122 R2E : 0.497
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.124 (0.0718) R2dN8 : 0.000814 R2N8 : -0.00139
σ : 0.623
deviance : 178.71
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_____
C
peak time of C : 21.5
E
wheather : temperature
threshold : 10.93
memory length : 12
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.95
open length of G : 10

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.4 0.615 12 -0.795 3.71 -2.13 1.19 -0.309 -0.144 21.5 9.761 10 4.98 10
171.64 0.61 12 -0.795 3.71 -2.13 1.19 -- -0.144 21.5 9.761 10 4.98 10
174.09 0.615 12 -0.883 3.7 -2.03 -- -0.967 -0.123 21.5 7.508 9 4.98 10
178.71 0.623 12 -0.806 3.7 -2.2 -- -- -0.124 21.5 10.93 12 4.95 10
232.84 0.711 11.8 -0.0816 -- -5.82 -- -0.99 0.269 -- 0.6372 309 1.22 11.5
222.5 0.699 12.1 -0.903 5.41 -- 1.75 -- -0.271 21.8 -- -- -- --
234.3 0.717 12.1 -0.97 5.4 -- -- -- -0.274 21.8 -- -- -- --
208.1 0.672 11.8 -0.37 -- -5.53 -- -- 0.0859 -- -1.141 270 2.13 10.7
195.95 0.652 12 -- 3.69 -2.25 -- -- -0.0451 21.6 12.04 12 4.97 10
1980.32 2.08 11.9 -0.913 -- -- -- -- -0.276 -- -- -- -- --
259.11 0.753 12 -- 5.4 -- -- -- -0.166 21.8 -- -- -- --
214.81 0.683 11.8 -- -- -5.35 -- -- 0.0523 -- -3.799 248 2.28 10.8
2002.31 2.09 11.9 -- -- -- -- -- -0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.15 temperature 10.0 10 > th dose dependent rect. 5 10
15 181.76 radiation 1.0 30 > th dose independent rect. 5 10
27 182.40 temperature 20.0 90 > th dose independent rect. 24 4
44 183.60 atmosphere 1015.0 10 < th dose independent rect. 15 14
45 183.85 atmosphere 1015.0 90 < th dose independent rect. 14 14
46 183.92 radiation 40.0 90 < th dose independent rect. 14 14
51 184.36 temperature 15.0 90 > th dose dependent rect. 24 4
54 184.78 precipitation 0.1 90 < th dose independent rect. 4 11
55 184.78 precipitation 0.1 90 < th dose dependent rect. 4 11
56 184.95 temperature 20.0 10 > th dose independent rect. 24 5
58 184.98 temperature 20.0 90 > th dose independent rect. 14 14
62 185.50 temperature 20.0 270 > th dose independent rect. 24 1
67 185.62 atmosphere 995.0 90 > th dose independent rect. 4 11
69 185.66 temperature 20.0 10 > th dose independent rect. 1 3
84 186.45 precipitation 0.1 10 < th dose independent rect. 5 10
85 186.45 precipitation 0.1 10 < th dose dependent rect. 5 10
86 186.46 precipitation 0.1 270 < th dose independent rect. 2 11
87 186.46 precipitation 0.1 270 < th dose dependent rect. 2 11
88 186.48 temperature 10.0 90 > th dose independent rect. 4 11
89 186.48 atmosphere 1015.0 90 < th dose independent rect. 4 11
97 186.93 humidity 50.0 10 > th dose independent rect. 5 10
100 187.02 wind 9.0 90 < th dose independent rect. 4 11
106 187.16 radiation 40.0 10 < th dose independent rect. 15 14
107 187.16 temperature 10.0 10 > th dose dependent rect. 15 14
108 187.22 temperature 10.0 10 > th dose independent rect. 5 10
110 187.22 atmosphere 995.0 10 > th dose independent rect. 5 10
111 187.22 atmosphere 1015.0 10 < th dose independent rect. 5 10
118 187.41 radiation 1.0 30 < th dose independent rect. 24 17
121 187.46 wind 9.0 10 < th dose independent rect. 5 10
132 187.82 wind 9.0 90 < th dose independent rect. 15 13
133 187.82 temperature 15.0 270 > th dose dependent rect. 24 1
142 188.10 wind 9.0 90 < th dose dependent rect. 4 10
149 188.29 wind 9.0 10 < th dose independent rect. 15 14
152 188.39 temperature 10.0 720 > th dose dependent rect. 3 3
157 188.54 temperature 15.0 10 > th dose dependent rect. 1 3
165 188.80 radiation 1.0 30 < th dose independent rect. 24 12
168 188.87 temperature 15.0 10 > th dose dependent rect. 24 5
172 189.07 radiation 1.0 30 < th dose independent rect. 24 8
202 189.57 radiation 10.0 10 < th dose dependent rect. 24 17
225 189.99 wind 9.0 90 < th dose dependent rect. 4 20
235 190.17 temperature 15.0 270 > th dose dependent rect. 22 5
236 190.23 wind 7.0 90 < th dose independent rect. 4 20
250 190.50 temperature 10.0 10 > th dose dependent rect. 5 19
253 190.57 radiation 10.0 43200 < th dose dependent rect. 19 6
254 190.59 humidity 50.0 90 > th dose independent rect. 4 11
258 190.69 wind 7.0 270 < th dose independent rect. 2 11
288 190.88 wind 1.0 90 > th dose independent rect. 1 16
290 190.90 precipitation 0.1 270 < th dose independent rect. 1 23
291 190.90 precipitation 0.1 270 < th dose dependent rect. 1 23
292 190.91 humidity 80.0 90 > th dose independent rect. 24 4
299 191.01 precipitation 0.1 90 < th dose independent rect. 15 13
301 191.01 precipitation 0.1 90 < th dose dependent rect. 15 13
302 191.02 wind 3.0 10 < th dose dependent rect. 24 4
304 191.09 radiation 1.0 30 < th dose independent rect. 24 6
305 191.09 radiation 1.0 30 < th dose dependent rect. 24 12
324 191.35 radiation 1.0 30 < th dose dependent rect. 24 8
328 191.38 radiation 40.0 10 < th dose dependent rect. 14 15
351 191.78 atmosphere 995.0 90 > th dose independent rect. 4 20
378 192.08 radiation 1.0 30 < th dose dependent rect. 24 6
382 192.13 humidity 50.0 90 > th dose dependent rect. 24 4
385 192.20 atmosphere 995.0 10 > th dose independent rect. 15 14
390 192.28 temperature 20.0 720 > th dose independent rect. 4 1
391 192.29 wind 7.0 10 < th dose independent rect. 5 19
404 192.38 humidity 80.0 10 > th dose independent rect. 24 5
410 192.39 atmosphere 995.0 90 > th dose independent rect. 15 13
413 192.42 temperature 10.0 270 > th dose independent rect. 2 11
414 192.42 atmosphere 995.0 270 > th dose independent rect. 2 11
415 192.42 atmosphere 1015.0 270 < th dose independent rect. 2 11
419 192.46 precipitation 0.1 90 < th dose independent rect. 4 20
420 192.46 precipitation 0.1 90 < th dose dependent rect. 4 20
433 192.65 temperature 10.0 90 > th dose dependent rect. 4 20
435 192.69 atmosphere 1010.0 90 < th dose independent rect. 24 4
445 192.78 temperature 30.0 90 < th dose independent rect. 24 4
446 192.78 humidity 50.0 90 > th dose independent rect. 24 4
449 192.78 atmosphere 995.0 90 > th dose independent rect. 24 4
450 192.78 radiation 1.0 90 < th dose independent rect. 24 4
455 192.78 temperature 10.0 90 > th dose independent rect. 4 20
456 192.78 radiation 1.0 90 < th dose dependent rect. 24 4
461 192.79 wind 9.0 90 < th dose independent rect. 24 4
473 192.95 radiation 1.0 30 > th dose independent sin 4 NA
476 192.99 atmosphere 995.0 10 > th dose independent rect. 5 19
478 192.99 wind 9.0 10 < th dose dependent rect. 5 19
489 193.17 wind 9.0 90 < th dose dependent rect. 24 4
507 193.36 atmosphere 1010.0 10 < th dose independent rect. 24 5
512 193.40 radiation 1.0 30 < th dose independent sin 4 NA
520 193.52 wind 9.0 270 < th dose independent rect. 1 23
539 193.69 humidity 50.0 10 > th dose independent rect. 5 19
583 194.02 wind 9.0 10 < th dose independent rect. 24 5
585 194.02 temperature 30.0 10 < th dose independent rect. 24 5
586 194.02 humidity 50.0 10 > th dose independent rect. 24 5
589 194.02 atmosphere 995.0 10 > th dose independent rect. 24 5
595 194.02 temperature 10.0 10 > th dose independent rect. 5 19
598 194.04 humidity 50.0 10 > th dose independent rect. 15 14
607 194.10 precipitation 0.1 90 < th dose independent rect. 24 4
609 194.10 precipitation 0.1 90 < th dose dependent rect. 24 4
614 194.15 humidity 80.0 270 > th dose independent rect. 24 1
668 194.32 atmosphere 1010.0 270 < th dose independent rect. 24 1
673 194.35 precipitation 0.1 10 < th dose independent rect. 5 19
674 194.35 precipitation 0.1 10 < th dose dependent rect. 5 19
678 194.40 humidity 50.0 270 > th dose independent rect. 2 11
684 194.44 wind 9.0 270 < th dose independent rect. 24 1
686 194.44 temperature 30.0 270 < th dose independent rect. 24 1
687 194.44 humidity 50.0 270 > th dose independent rect. 24 1
690 194.44 atmosphere 995.0 270 > th dose independent rect. 24 1
691 194.44 radiation 1.0 270 < th dose independent rect. 24 1
698 194.44 temperature 10.0 270 > th dose independent rect. 1 23
699 194.44 radiation 1.0 270 < th dose dependent rect. 24 1
706 194.45 temperature 25.0 10 > th dose dependent rect. 19 20
725 194.66 precipitation 0.1 270 < th dose independent rect. 24 1
726 194.66 temperature 30.0 10 < th dose independent rect. 24 18
727 194.66 precipitation 0.1 270 < th dose dependent rect. 24 1
741 194.81 atmosphere 995.0 90 > th dose dependent rect. 24 4
768 194.97 wind 7.0 270 < th dose independent rect. 2 21
793 195.12 radiation 40.0 90 < th dose dependent rect. 13 15
802 195.19 temperature 30.0 10 < th dose dependent rect. 24 18
828 195.26 humidity 50.0 270 > th dose dependent rect. 24 1
837 195.32 wind 9.0 270 < th dose dependent rect. 24 1
895 195.60 wind 3.0 90 < th dose independent rect. 24 4
902 195.66 temperature 30.0 90 < th dose independent rect. 24 17
912 195.77 humidity 50.0 90 > th dose independent rect. 4 20
913 195.77 precipitation 0.1 270 < th dose independent rect. 2 21
914 195.77 precipitation 0.1 270 < th dose dependent rect. 2 21
931 195.88 atmosphere 995.0 270 > th dose dependent rect. 24 1
958 196.01 radiation 1.0 30 < th dose dependent sin 4 NA
970 196.09 radiation 10.0 43200 < th dose independent rect. 17 15