BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0171800 Os01g0171800|AK067987
         (338 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0171800  Conserved hypothetical protein                      644   0.0  
Os02g0130600  Conserved hypothetical protein                      342   3e-94

>Os01g0171800 Conserved hypothetical protein
          Length = 338

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/338 (93%), Positives = 317/338 (93%)

Query: 1   MPSSTMAVDTTASEYWLNWRFMLCAVWVYSCMVLACFLIWKYEGPXXXXXXXXXXXXXXX 60
           MPSSTMAVDTTASEYWLNWRFMLCAVWVYSCMVLACFLIWKYEGP               
Sbjct: 1   MPSSTMAVDTTASEYWLNWRFMLCAVWVYSCMVLACFLIWKYEGPSSQDGNGDGGEDSED 60

Query: 61  ARPPRAASGVVYLEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAXXXXXXGWSVFLYYT 120
           ARPPRAASGVVYLEDCWKPCLEQIHPGWLLAFRVVSFFILASLLA      GWSVFLYYT
Sbjct: 61  ARPPRAASGVVYLEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAVDVVVDGWSVFLYYT 120

Query: 121 QWTFLLVTLYFGLGSVLSIYGCYQYSYKNGDNRSGADHGTYIIAPAGESVYDQSIKNPCY 180
           QWTFLLVTLYFGLGSVLSIYGCYQYSYKNGDNRSGADHGTYIIAPAGESVYDQSIKNPCY
Sbjct: 121 QWTFLLVTLYFGLGSVLSIYGCYQYSYKNGDNRSGADHGTYIIAPAGESVYDQSIKNPCY 180

Query: 181 SKMHGGKEIAGFWGYLFQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGTHSI 240
           SKMHGGKEIAGFWGYLFQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGTHSI
Sbjct: 181 SKMHGGKEIAGFWGYLFQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGTHSI 240

Query: 241 NVVFMIGDTAMNSLRFPWFRIAYFLLWTGAFVNVQWLIHASISIWWPYPFLDLAFPKAPV 300
           NVVFMIGDTAMNSLRFPWFRIAYFLLWTGAFVNVQWLIHASISIWWPYPFLDLAFPKAPV
Sbjct: 241 NVVFMIGDTAMNSLRFPWFRIAYFLLWTGAFVNVQWLIHASISIWWPYPFLDLAFPKAPV 300

Query: 301 WYLVVAVMHFPCYALFALVMRLKQSLLERWFPQSYTCV 338
           WYLVVAVMHFPCYALFALVMRLKQSLLERWFPQSYTCV
Sbjct: 301 WYLVVAVMHFPCYALFALVMRLKQSLLERWFPQSYTCV 338



>Os02g0130600 Conserved hypothetical protein
          Length = 362

 Score =  342 bits (876), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 221/331 (66%), Gaps = 10/331 (3%)

Query: 5   TMAVDTTASEYWLNWRFMLCAVWVYSCMVLACFLIWKYEGPXXXXXXXXXXXXXXXARPP 64
           T+  DT+   YW+ WR  +CA+ V +CM +A  L+W++EGP               ++  
Sbjct: 33  TVTADTSDLHYWMQWRAAVCALSVLACMAVAACLVWRHEGPGAERRPGGASGGGGGSKE- 91

Query: 65  RAASGVVYLEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAXXXXXXGWSVFLYYTQWTF 124
           R   GV+Y ++ W+PCL  IHP WLL +R++SFF+L SLL       G ++F YYTQWTF
Sbjct: 92  RRRPGVLYDDEAWRPCLRDIHPAWLLGYRLISFFVLLSLLIVIVISDGGTIFYYYTQWTF 151

Query: 125 LLVTLYFGLGSVLSIYGCYQYSYKNG-DNRSGADHGTYIIAPAGESVYDQSIKNPCYSKM 183
           +LVT+YFGLG+ LSIYGC + + +N    R+  + G+Y+   AG          P  +  
Sbjct: 152 ILVTIYFGLGTALSIYGCSKLADENVVTERTDMELGSYVAHGAG--------TKPNLNGE 203

Query: 184 HGGKEIAGFWGYLFQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGTHSINVV 243
               EIAGFWGYL QI++QTNAGAVM+TD VFWFI++PFL    Y++NFLLIG HS+N V
Sbjct: 204 DDTGEIAGFWGYLLQIIYQTNAGAVMLTDCVFWFIIFPFLTVKDYNLNFLLIGMHSVNAV 263

Query: 244 FMIGDTAMNSLRFPWFRIAYFLLWTGAFVNVQWLIHASISIWWPYPFLDLAFPKAPVWYL 303
           F++G+ A+NSL FPWFR+AYF LWT  +V  QW++HAS  +WWPYPFLD++   +P+WY 
Sbjct: 264 FLLGEAALNSLSFPWFRVAYFFLWTALYVIFQWILHASTPLWWPYPFLDVSANLSPLWYF 323

Query: 304 VVAVMHFPCYALFALVMRLKQSLLERWFPQS 334
            VA+M  PCYA+F LV++LK  LL RWFP S
Sbjct: 324 AVAIMQLPCYAVFRLVIKLKHHLLTRWFPGS 354



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.142    0.504 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,213,227
Number of extensions: 421814
Number of successful extensions: 934
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 931
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 237
Effective length of database: 11,762,187
Effective search space: 2787638319
Effective search space used: 2787638319
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 156 (64.7 bits)