BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0165100 Os01g0165100|AK103011
(502 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0165100 Conserved hypothetical protein 991 0.0
Os07g0231800 Conserved hypothetical protein 471 e-133
Os03g0375200 105 8e-23
>Os01g0165100 Conserved hypothetical protein
Length = 502
Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/502 (95%), Positives = 479/502 (95%)
Query: 1 MAHSLPLDVWGWITNLPPFSQWRSNAMSLCICPTPSASESSQPSVNLSVVKTPPTQPSFV 60
MAHSLPLDVWGWITNLPPFSQWRSNAMSLCICPTPSASESSQPSVNLSVVKTPPTQPSFV
Sbjct: 1 MAHSLPLDVWGWITNLPPFSQWRSNAMSLCICPTPSASESSQPSVNLSVVKTPPTQPSFV 60
Query: 61 TFSIFANYRVPISLWTSKPVHLKSYTQQSLDEQEMLELFVDIVDWVLRSGPNKKLSFQFP 120
TFSIFANYRVPISLWTSKPVHLKSYTQQSLDEQEMLELFVDIVDWVLRSGPNKKLSFQFP
Sbjct: 61 TFSIFANYRVPISLWTSKPVHLKSYTQQSLDEQEMLELFVDIVDWVLRSGPNKKLSFQFP 120
Query: 121 RAQIHGNLKDVFNIVFLSLAFLVCIYEAPHALRCRCLESLRTQLTGPKCKDAAKTFVRML 180
RAQIHGNLKDVFNIVFLSLAFLVCIYEAPHALRCRCLESLRTQLTGPKCKDAAKTFVRML
Sbjct: 121 RAQIHGNLKDVFNIVFLSLAFLVCIYEAPHALRCRCLESLRTQLTGPKCKDAAKTFVRML 180
Query: 181 GANLEEQWMQTMNLAVTNWIVEQRSSHHSFGVPSPLFSYALSASGLWKVQLYCPLIAMSM 240
GANLEEQWMQTMNLAVTNWIVEQRSSHHSFGVPSPLFSYALSASGLWKVQLYCPLIAMSM
Sbjct: 181 GANLEEQWMQTMNLAVTNWIVEQRSSHHSFGVPSPLFSYALSASGLWKVQLYCPLIAMSM 240
Query: 241 EDPAVPTQDERLLFSLTYQQLEGVIQLAYKTIRRDNWIDVEIKVDNIRCDVDSLVSEILM 300
EDPAVPTQDERLLFSLTYQQLEGVIQLAYKTIRRDNWIDVEIKVDNIRCDVDSLVSEILM
Sbjct: 241 EDPAVPTQDERLLFSLTYQQLEGVIQLAYKTIRRDNWIDVEIKVDNIRCDVDSLVSEILM 300
Query: 301 TERGHGSEEKHFPSRVMLQITPMQQXXXXXXXXXXXXXNPTHEFGLEKGIEGSFDPPNTF 360
TERGHGSEEKHFPSRVMLQITPMQQ NPTHEFGLEKGIEGSFDPPNTF
Sbjct: 301 TERGHGSEEKHFPSRVMLQITPMQQSDVLSVSVSKSSDNPTHEFGLEKGIEGSFDPPNTF 360
Query: 361 GLKASVSESLTLTMKPWKFEQSVHGNTTTLNWFLHDGVNGREVYXXXXXXXXXXQPRAWF 420
GLKASVSESLTLTMKPWKFEQSVHGNTTTLNWFLHDGVNGREVY QPRAWF
Sbjct: 361 GLKASVSESLTLTMKPWKFEQSVHGNTTTLNWFLHDGVNGREVYSSKPSKLSLLQPRAWF 420
Query: 421 RDRYSTVYRPFTKKGGVIFARDEYGDSVWWKICGAALGKTMDWEIRGWIWLTYWPNKQKT 480
RDRYSTVYRPFTKKGGVIFARDEYGDSVWWKICGAALGKTMDWEIRGWIWLTYWPNKQKT
Sbjct: 421 RDRYSTVYRPFTKKGGVIFARDEYGDSVWWKICGAALGKTMDWEIRGWIWLTYWPNKQKT 480
Query: 481 FHSETRRLEFRECLQLPLMKSP 502
FHSETRRLEFRECLQLPLMKSP
Sbjct: 481 FHSETRRLEFRECLQLPLMKSP 502
>Os07g0231800 Conserved hypothetical protein
Length = 495
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/501 (47%), Positives = 318/501 (63%), Gaps = 11/501 (2%)
Query: 1 MAHSLPLDVWGWITNLPPFSQWRSNAMSLCICPTPSASESSQPSVNLSVVKTPPTQPSFV 60
MA ++ D+W W +LP WR + L IC +PS ++S +NL + TQ +
Sbjct: 1 MASAVAPDIWHWTRSLPNPKHWRGKSYYLQICNSPSTNQS----LNLIISWHSETQSFNL 56
Query: 61 TFSIFANYRVPISLWTSKPVHLKSYTQQSLDEQEMLELFVDIVDWVLRSGP--NKKLSFQ 118
++SI A + P+SLW+S LKS + F DI+ VLR GP NK F+
Sbjct: 57 SYSICAEHHDPVSLWSSHYSRLKSVNGSDF----AIHFFHDIICGVLRYGPYSNKMSPFR 112
Query: 119 FPRAQIHGNLKDVFNIVFLSLAFLVCIYEAPHALRCRCLESLRTQLTGPKCKDAAKTFVR 178
P Q+ + +FN+ L+LA +VCIYEAP LR + ++ QL AAK +
Sbjct: 113 LPNVQVSEDTGKIFNLAALTLALMVCIYEAPSTLRRDLIGTVSAQLIRGDMWGAAKKLML 172
Query: 179 MLGANLEEQWMQTMNLAVTNWIVEQRSSHHSFGVPSPLFSYALSASGLWKVQLYCPLIAM 238
+G+++EEQWM+++NLAVTNWI+E R S + P +FSYA+SA LWKV+LYCP++AM
Sbjct: 173 AMGSDMEEQWMRSLNLAVTNWIIETRRSGGTPVSPFTVFSYAVSAIRLWKVELYCPVVAM 232
Query: 239 SMEDPAVPTQDERLLFSLTYQQLEGVIQLAYKTIRRDNWIDVEIKVDNIRCDVDSLVSEI 298
ME PA T+DE+L FSL YQ LE VIQ Y+ R+NWIDV + VDNIRCD+ LVSE
Sbjct: 233 IMEHPAHQTKDEKLQFSLNYQHLEAVIQFIYRVTFRENWIDVTVNVDNIRCDLIQLVSET 292
Query: 299 LMTERGHGSEEKHFPSRVMLQITPMQQXXXXXXXXXXXXXNPTHEFGLEKGIEGSFD-PP 357
LM ++G+GS+EKHFPSR+ LQ+TP+ Q NP E E G++ + P
Sbjct: 293 LMAKQGYGSDEKHFPSRISLQLTPLVQTDILSLTVSRSTDNPAQEVDTEMGLDATLSAAP 352
Query: 358 NTFGLKASVSESLTLTMKPWKFEQSVHGNTTTLNWFLHDGVNGREVYXXXXXXXXXXQPR 417
T G+ S E++T T++PWKFE SVHGNT LNWFLH G GREV+ QPR
Sbjct: 353 ATIGITMSAHETVTRTLRPWKFEHSVHGNTAALNWFLHGGAEGREVFSSEPHKRELLQPR 412
Query: 418 AWFRDRYSTVYRPFTKKGGVIFARDEYGDSVWWKICGAALGKTMDWEIRGWIWLTYWPNK 477
+WFR+RY+ RPFT+ GGVIFA DEYG+SV W++ AA GKT++WE++G IW+TYWPNK
Sbjct: 413 SWFRNRYTNPGRPFTRGGGVIFAGDEYGESVCWRMPAAAAGKTVEWEMKGRIWVTYWPNK 472
Query: 478 QKTFHSETRRLEFRECLQLPL 498
++T H ETRR+EFRE L+L +
Sbjct: 473 KRTLHVETRRVEFRELLRLTI 493
>Os03g0375200
Length = 565
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 104/438 (23%), Positives = 173/438 (39%), Gaps = 50/438 (11%)
Query: 111 PNKKLSFQFPRAQIHGNLKDVFNIVFLSLAFLVCIYEAPHALRCRCLESLRTQLTGP--K 168
P KL + + + F++ L F +C EAP ++L +
Sbjct: 120 PKSKLDEEIVAGIGNDSAASFFSLTLLLRLFWLCATEAPADTGFLFFQALGADIQRALVD 179
Query: 169 CKDAAKTFVRMLGANLEEQWMQTMNLAVTNWIVEQR-----------SSHHSFGVPSPLF 217
C+ A F+ LG ++EE++M+++ + + + ++ +P+
Sbjct: 180 CRPALALFLASLGPDVEERFMRSLGYMLAKLCLLREMQADADQPAPAATRRPRALPAACL 239
Query: 218 SYALSASGLWKVQLYCPLIAMSMEDPAVPT------------QDERLLFSLTYQQLEGVI 265
SYA GLW ++ Y P++AM A T ++ L + L +QQLE V
Sbjct: 240 SYATEVHGLWVLRGYAPVLAMPRVTCAASTTAPITALPHEAPEEPALRYGLVHQQLEVVA 299
Query: 266 QLAY--KTIRRDNWIDVEIKVD---------NIRCDVDSLVSEILMTERGHGSEEKHFPS 314
QL Y + R + ++ V ++VD R D ++ E+HFPS
Sbjct: 300 QLEYAVRARRGERFMTVAVRVDNVRVRVARLGFRRDDADADADGGDAHDDAMDGERHFPS 359
Query: 315 RVMLQITP-MQQXXXXXXXXXXXXXNPTHEFGLEKGIEGSFDPPNTFGL---------KA 364
R+ L + P NP + + ++G+F L KA
Sbjct: 360 RLRLWVGPRFGASYATGPSLGRSTGNPEQDVETTRTVKGAFAAAGATKLANGGVPPRIKA 419
Query: 365 SVSESLTLTMKPWKFEQSVHGNTTTLNWFLHDGVNGREVYX----XXXXXXXXXQPRAWF 420
S + W++EQ G+ L D G E+ PR
Sbjct: 420 KTRSSARARNRSWRWEQEAEGSAGVFEGVLCDPATGTEISAWRGDNNNNNGGAGDPRNGM 479
Query: 421 RDRYSTVYRPFTKKGGVIFARDEYGDSVWWKICGAALGKTMDWEIRGWIWLTYWPNKQKT 480
R RY R F+K G++ A DE + V W++ A G+T+ W + WLTY PN+ ++
Sbjct: 480 RRRYGGPGRAFSKMRGLVVAGDELPEEVTWRVGREAEGRTLPWRVGLKAWLTYLPNQVRS 539
Query: 481 FHSETRRLEFRECLQLPL 498
H ETR +E+ + LPL
Sbjct: 540 HHFETRCVEWAHEVDLPL 557
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,504,507
Number of extensions: 698384
Number of successful extensions: 1566
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1559
Number of HSP's successfully gapped: 3
Length of query: 502
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 397
Effective length of database: 11,553,331
Effective search space: 4586672407
Effective search space used: 4586672407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)