BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0159800 Os01g0159800|AK106292
(258 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0159800 Basic helix-loop-helix dimerisation region bHL... 432 e-122
Os05g0163900 Basic helix-loop-helix dimerisation region bHL... 183 1e-46
Os03g0260600 Basic helix-loop-helix dimerisation region bHL... 114 7e-26
Os01g0218100 Basic helix-loop-helix dimerisation region bHL... 104 5e-23
Os08g0432800 Similar to BHLH transcription activator Ivory ... 77 1e-14
Os09g0463900 72 3e-13
>Os01g0159800 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 258
Score = 432 bits (1112), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/258 (84%), Positives = 217/258 (84%)
Query: 1 MAECXXXXXXXXXXXXXXXXYDGCNPSVYRGPILLPRQANSAPPAVPPEMXXXXXXXXXA 60
MAEC YDGCNPSVYRGPILLPRQANSAPPAVPPEM A
Sbjct: 1 MAECQPLQLQEGKKLQELQPYDGCNPSVYRGPILLPRQANSAPPAVPPEMSSSSGSGRSA 60
Query: 61 TEARALKIHSEAXXXXXXXINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEI 120
TEARALKIHSEA INAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEI
Sbjct: 61 TEARALKIHSEAERRRRERINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEI 120
Query: 121 TQRTPLPPETNEVSIECFTGDXXXXXXXXXGNHKTLYIKASISCDDRPDLIAGITHAFHG 180
TQRTPLPPETNEVSIECFTGD GNHKTLYIKASISCDDRPDLIAGITHAFHG
Sbjct: 121 TQRTPLPPETNEVSIECFTGDAATAATTVAGNHKTLYIKASISCDDRPDLIAGITHAFHG 180
Query: 181 LRLRTVRAEMTSLGGRVQHVFILCREEGIAGGVSLKSLKEAVRQALAKVASPELVYGSSH 240
LRLRTVRAEMTSLGGRVQHVFILCREEGIAGGVSLKSLKEAVRQALAKVASPELVYGSSH
Sbjct: 181 LRLRTVRAEMTSLGGRVQHVFILCREEGIAGGVSLKSLKEAVRQALAKVASPELVYGSSH 240
Query: 241 FQSKRQRILESHCSIMSI 258
FQSKRQRILESHCSIMSI
Sbjct: 241 FQSKRQRILESHCSIMSI 258
>Os05g0163900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 271
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/239 (48%), Positives = 146/239 (61%), Gaps = 24/239 (10%)
Query: 21 YDGCNPSVYRGPILLPRQANSAPPAVPPEMXXXXXXXXXATEARALKIHSEAXXXXXXXI 80
YD + SVYRG ++LPR+ P PP A +A A+ IHSEA I
Sbjct: 23 YDDLS-SVYRGTVVLPRRQGGLAPEPPPPRPSSSSGRSAAAQATAMTIHSEAERRRRERI 81
Query: 81 NAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEITQRTP-----LPPETNEVSI 135
NAHL TLRR++PD KQMDKATLLA VV+QVK LK +A+E T TP +PPE NEV++
Sbjct: 82 NAHLATLRRILPDAKQMDKATLLASVVNQVKHLKTRATEAT--TPSTAATIPPEANEVTV 139
Query: 136 ECFTGDXXXXXXXXXGNHKT---LYIKASISCDDRPDLIAGITHAFHGLRLRTVRAEMTS 192
+C+ G G H Y++A++SCDDRP L+A I F LRLR + A+M+
Sbjct: 140 QCYAG----------GEHTAAARTYVRATVSCDDRPGLLADIAATFRRLRLRPLSADMSC 189
Query: 193 LGGRVQHVFILCR--EEGIAGGVSLKSLKEAVRQALAKVASPELVYGSSHFQSKRQRIL 249
LGGR +H F+LCR EE + LKEAVRQALAKVA PE VYG +SKRQR++
Sbjct: 190 LGGRTRHAFVLCREEEEEEDAAAEARPLKEAVRQALAKVALPETVYGGG-GRSKRQRLM 247
>Os03g0260600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 409
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 95/150 (63%), Gaps = 15/150 (10%)
Query: 62 EARAL---KIHSEAXXXXXXXINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKAS 118
+A+AL K HSEA INAHL LR ++P+T + DKA+LLA V+ VK+LKR+ S
Sbjct: 193 DAKALAASKSHSEAERRRRERINAHLARLRSLLPNTTKTDKASLLAEVIQHVKELKRQTS 252
Query: 119 EITQRT-PLPPETNEVSIECFTGDXXXXXXXXXGNHKTLYIKASISCDDRPDLIAGITHA 177
EIT+ PLP E++E++++ + + L ++AS+ CDDR DL+ + A
Sbjct: 253 EITEEACPLPTESDELTVDASSDE-----------DGRLVVRASLCCDDRTDLLPDLIRA 301
Query: 178 FHGLRLRTVRAEMTSLGGRVQHVFILCREE 207
LRLR ++AE+T+LGGRV++V ++ ++
Sbjct: 302 LKALRLRALKAEITTLGGRVKNVLVVTGDD 331
>Os01g0218100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 267
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 95/170 (55%), Gaps = 8/170 (4%)
Query: 63 ARALKIHSEAXXXXXXXINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEITQ 122
A ALK HSEA INAHL TLR M+P T +MDKA LLA VV VK LK A+ + +
Sbjct: 76 AMALKSHSEAERRRRERINAHLATLRTMVPCTDKMDKAALLAEVVGHVKKLKSAAARVGR 135
Query: 123 RTPLPPETNEVSIECFTGDXXXXXXXXXGNHKTLYIKASISCDDRPDLIAGITHAFHGLR 182
R +P +EV+++ G L ++A++SCDDR DL + A L
Sbjct: 136 RATVPSGADEVAVD-------EASATGGGGEGPLLLRATLSCDDRADLFVDVKRALQPLG 188
Query: 183 LRTVRAEMTSLGGRVQHVFIL-CREEGIAGGVSLKSLKEAVRQALAKVAS 231
L V +E+T+LGGRV+ F++ C G A ++ S++ A++ L K +S
Sbjct: 189 LEVVGSEVTTLGGRVRLAFLVSCGSRGGAAAAAMASVRHALQSVLDKASS 238
>Os08g0432800 Similar to BHLH transcription activator Ivory seed
Length = 345
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 84/158 (53%), Gaps = 26/158 (16%)
Query: 62 EARAL---KIHSEAXXXXXXXINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKAS 118
+A+AL + HSEA IN HL LR ++P+T + DKA+LLA V++ VK+LKR+ S
Sbjct: 115 DAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKELKRQTS 174
Query: 119 EITQRTP------------LPPETNEVSIECFTGDXXXXXXXXXGNHKTLYIKASISCDD 166
+ + LP E +E+ ++ + L +AS+ C+D
Sbjct: 175 AMMEDGAAGGEAAAAPVVLLPTEDDELEVDAAADEG-----------GRLVARASLCCED 223
Query: 167 RPDLIAGITHAFHGLRLRTVRAEMTSLGGRVQHVFILC 204
R DLI GI A LRLR RAE+ +LGGRV+ V ++
Sbjct: 224 RADLIPGIARALAALRLRARRAEIATLGGRVRSVLLIA 261
>Os09g0463900
Length = 215
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 64 RALKIHSEAXXXXXXXINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEITQR 123
RA + HSEA INAHL TLR ++P +MDKA LL VV V+ L+ +A+
Sbjct: 27 RARRSHSEAERKRRERINAHLDTLRGLVPSASRMDKAALLGEVVRYVRKLRSEAAGSA-- 84
Query: 124 TPLPPETNEVSIECFTGDXXXXXXXXXGNHKTLYIKASISCDDRPDLIAGITHAFHGLRL 183
+P E +EV +E + +KAS+ C DRP L++ + A +
Sbjct: 85 AVVPGEGDEVVVEEEEVEVEGCSCDAGERQAARRVKASVCCADRPGLMSELGDAERSVSA 144
Query: 184 RTVRAEMTSLGGRVQ 198
R VRAE+ ++GGR +
Sbjct: 145 RAVRAEIATVGGRTR 159
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,148,457
Number of extensions: 239213
Number of successful extensions: 705
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 8
Length of query: 258
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 159
Effective length of database: 11,866,615
Effective search space: 1886791785
Effective search space used: 1886791785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)