Os01g0159800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os01g0159800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.09 | 0.631 | 8.41 | 0.824 | 1.68 | -1.8 | 0.0662 | 2.78 | 0.369 | 1.65 | 25.75 | 673 | -- | -- |
| 189.17 | 0.641 | 8.34 | 1.31 | 1.75 | -1.98 | -0.314 | -- | 0.542 | 1.51 | 24.27 | 609 | -- | -- |
| 180.09 | 0.625 | 8.41 | 0.823 | 1.68 | -1.8 | -- | 2.78 | 0.369 | 1.68 | 25.85 | 667 | -- | -- |
| 189.27 | 0.641 | 8.35 | 1.34 | 1.72 | -2.01 | -- | -- | 0.522 | 1.48 | 24.32 | 653 | -- | -- |
| 322.83 | 0.837 | 8.44 | 0.545 | -- | -2.69 | -- | 2.93 | 0.189 | -- | 27.67 | 940 | -- | -- |
| 249.87 | 0.741 | 8.26 | 1.87 | 1.84 | -- | -0.381 | -- | 0.912 | 1.07 | -- | -- | -- | -- |
| 250.48 | 0.741 | 8.26 | 1.89 | 1.84 | -- | -- | -- | 0.914 | 1.08 | -- | -- | -- | -- |
| 332.12 | 0.849 | 8.38 | 1.13 | -- | -2.82 | -- | -- | 0.319 | -- | 26.9 | 922 | -- | -- |
| 228.6 | 0.704 | 8.39 | -- | 1.61 | -2.79 | -- | -- | 0.321 | 1.56 | 23.35 | 849 | -- | -- |
| 460.57 | 1 | 8.23 | 1.96 | -- | -- | -- | -- | 0.95 | -- | -- | -- | -- | -- |
| 344.4 | 0.868 | 8.31 | -- | 1.87 | -- | -- | -- | 0.704 | 1.12 | -- | -- | -- | -- |
| 361.31 | 0.885 | 8.43 | -- | -- | -3.3 | -- | -- | 0.102 | -- | 27 | 942 | -- | -- |
| 561.66 | 1.11 | 8.28 | -- | -- | -- | -- | -- | 0.733 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.65 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 22 |
| 4 | 179.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 10 | 179.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 22 |
| 20 | 180.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 28 | 180.47 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 39 | 181.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 186 | 185.22 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 205 | 185.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 219 | 185.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 243 | 186.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 352 | 187.35 | temperature | 25 | 1440 | < th | dose dependent | sin | 20 | NA |
| 354 | 187.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 360 | 187.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 383 | 187.72 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 449 | 188.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 558 | 188.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 580 | 188.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 700 | 189.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 748 | 189.66 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 827 | 189.91 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 863 | 190.03 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 913 | 190.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 944 | 190.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 6 |