BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0159800 Os01g0159800|AK106292
(258 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68810.1 | chr1:25861289-25862882 FORWARD LENGTH=369 107 5e-24
AT3G25710.1 | chr3:9369598-9371096 FORWARD LENGTH=345 107 6e-24
AT2G40200.1 | chr2:16791098-16792027 FORWARD LENGTH=255 105 2e-23
AT2G41130.1 | chr2:17143360-17144686 FORWARD LENGTH=254 99 2e-21
AT3G56770.1 | chr3:21029202-21030618 REVERSE LENGTH=231 99 3e-21
AT4G38070.1 | chr4:17876535-17882569 FORWARD LENGTH=1514 54 7e-08
>AT1G68810.1 | chr1:25861289-25862882 FORWARD LENGTH=369
Length = 368
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 20/230 (8%)
Query: 31 GPILLPRQANSAPPAVPPEMXXXXXXXXXATEARAL-KIHSEAXXXXXXXINAHLTTLRR 89
GP++ QA S P + E+ +A A K HSEA IN HL LR
Sbjct: 142 GPVV---QAGSGPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRS 198
Query: 90 MIPDTKQMDKATLLARVVDQVKDLKRKASEITQRTPLPPETNEVSIECFTGDXXXXXXXX 149
++P+T + DKA+LLA V+ VK+LKR+ S I++ +P E++E+++ FT +
Sbjct: 199 ILPNTTKTDKASLLAEVIQHVKELKRETSVISETNLVPTESDELTV-AFTEE------EE 251
Query: 150 XGNHKTLYIKASISCDDRPDLIAGITHAFHGLRLRTVRAEMTSLGGRVQHVFILCREEGI 209
G+ + IKAS+ C+DR DL+ + +RL+T++AE+T++GGRV++V + EE
Sbjct: 252 TGDGR-FVIKASLCCEDRSDLLPDMIKTLKAMRLKTLKAEITTVGGRVKNVLFVTGEESS 310
Query: 210 AGGVS----LKSLKEAVRQALAKVASPELVYGSSHFQSKRQRILESHCSI 255
V + +++EA++ + K E SS +KRQR + SH +I
Sbjct: 311 GEEVEEEYCIGTIEEALKAVMEKSNVEE---SSSSGNAKRQR-MSSHNTI 356
>AT3G25710.1 | chr3:9369598-9371096 FORWARD LENGTH=345
Length = 344
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 13/148 (8%)
Query: 62 EARAL---KIHSEAXXXXXXXINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKAS 118
+A+AL K HSEA IN HL LR ++P+T + DKA+LLA V+ +K+LKR+ S
Sbjct: 126 DAKALAASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTS 185
Query: 119 EITQRTPLPPETNEVSIECFTGDXXXXXXXXXGNHKTLYIKASISCDDRPDLIAGITHAF 178
+IT +P E ++++++ D GN L I+AS C DR DL+ + +A
Sbjct: 186 QITDTYQVPTECDDLTVDSSYND-------EEGN---LVIRASFCCQDRTDLMHDVINAL 235
Query: 179 HGLRLRTVRAEMTSLGGRVQHVFILCRE 206
LRLRT++AE+ ++GGRV+++ L RE
Sbjct: 236 KSLRLRTLKAEIATVGGRVKNILFLSRE 263
>AT2G40200.1 | chr2:16791098-16792027 FORWARD LENGTH=255
Length = 254
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 15/182 (8%)
Query: 80 INAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEITQRTPLPPETNEVSIECFT 139
IN+HLT LR+++P++ ++DKA LLA V++QVK+LK+KA+E LP E +EV+++ T
Sbjct: 78 INSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAAESPIFQDLPTEADEVTVQPET 137
Query: 140 GDXXXXXXXXXGNHKTLYIKASISCDDRPDLIAGITHAFHGLRLRTVRAEMTSLGGRVQH 199
N T+ KAS C+D+P+ I+ I L+L T++AE+ S+GGR++
Sbjct: 138 ------ISDFESNTNTIIFKASFCCEDQPEAISEIIRVLTKLQLETIQAEIISVGGRMRI 191
Query: 200 VFIL----CRE-EGIAGGVSLKSLKEAVRQALAKVASPELVYGS-SHFQSKRQR-ILESH 252
FIL C E IA S K+LK+++ AL ++ S S +SKRQR L SH
Sbjct: 192 NFILKDSNCNETTNIAA--SAKALKQSLCSALNRITSSSTTTSSVCRIRSKRQRWFLSSH 249
Query: 253 CS 254
S
Sbjct: 250 YS 251
>AT2G41130.1 | chr2:17143360-17144686 FORWARD LENGTH=254
Length = 253
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 11/166 (6%)
Query: 65 ALKIHSEAXXXXXXXINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEITQ-- 122
AL+ H EA IN+HL LR ++ + DKATLLA+VV +V++LK++ E +
Sbjct: 67 ALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKATLLAKVVQRVRELKQQTLETSDSD 126
Query: 123 RTPLPPETNEVSIECFTGDXXXXXXXXXGNHKTLYIKASISCDDRPDLIAGITHAFHGLR 182
+T LP ET+E+S+ F GD N + KAS+ C+DR DL+ + L
Sbjct: 127 QTLLPSETDEISVLHF-GDY--------SNDGHIIFKASLCCEDRSDLLPDLMEILKSLN 177
Query: 183 LRTVRAEMTSLGGRVQHVFILCREEGIAGGVSLKSLKEAVRQALAK 228
++T+RAEM ++GGR + V ++ ++ + G S+ L+ A++ L +
Sbjct: 178 MKTLRAEMVTIGGRTRSVLVVAADKEMHGVESVHFLQNALKSLLER 223
>AT3G56770.1 | chr3:21029202-21030618 REVERSE LENGTH=231
Length = 230
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 99/175 (56%), Gaps = 16/175 (9%)
Query: 65 ALKIHSEAXXXXXXXINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKASEITQRT 124
+L+ H EA IN+HL LR+++ + DK+TLLA+VV +VK+LK++ EIT T
Sbjct: 45 SLRNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELKQQTLEITDET 104
Query: 125 PLPPETNEVSI----ECFTGDXXXXXXXXXGNHKTLYIKASISCDDRPDLIAGITHAFHG 180
+P ET+E+S+ +C GD + + K S C+DRP+L+ +
Sbjct: 105 -IPSETDEISVLNIEDCSRGD-----------DRRIIFKVSFCCEDRPELLKDLMETLKS 152
Query: 181 LRLRTVRAEMTSLGGRVQHVFILCREEGIAGGVSLKSLKEAVRQALAKVASPELV 235
L++ T+ A+MT++GGR ++V ++ ++ G S+ L+ A++ L + + +V
Sbjct: 153 LQMETLFADMTTVGGRTRNVLVVAADKEHHGVQSVNFLQNALKSLLERSSKSVMV 207
>AT4G38070.1 | chr4:17876535-17882569 FORWARD LENGTH=1514
Length = 1513
Score = 53.9 bits (128), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 61 TEAR--ALKIHSEAXXXXXXXINAHLTTLRRMIPDTKQMDKATLLARVVDQVKDLKRKAS 118
TE++ A K HS+A IN+ TLR ++P+ + DKA++L V +LK+
Sbjct: 1343 TESKEVAAKKHSDAERRRRLRINSQFATLRTILPNLVKQDKASVLGETVRYFNELKKMVQ 1402
Query: 119 EITQRTPLPPETNEVSIECFTGDXXXXXXXXXGNHKTLYIKASISCDDRPDLIAGITHAF 178
+I L E N C N+ + SC DR L++ + +
Sbjct: 1403 DIPTTPSL--EDNLRLDHC--------------NNNRDLARVVFSCSDREGLMSEVAESM 1446
Query: 179 HGLRLRTVRAEMTSLGGRVQ 198
++ + VRAE+ ++GGR +
Sbjct: 1447 KAVKAKAVRAEIMTVGGRTK 1466
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,309,422
Number of extensions: 138757
Number of successful extensions: 469
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 6
Length of query: 258
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 162
Effective length of database: 8,474,633
Effective search space: 1372890546
Effective search space used: 1372890546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)