Os05g0163900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os05g0163900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.69 | 0.281 | 2.87 | 0.0046 | 0.0588 | -0.473 | -0.172 | 1.77 | 0.0437 | 7.07 | 50.37 | 7 | -- | -- |
| 37.05 | 0.284 | 2.87 | -0.00666 | 0.0589 | -0.211 | -0.212 | -- | 0.0385 | 8.07 | 52 | 6 | -- | -- |
| 35.75 | 0.278 | 2.87 | 0.00227 | 0.0597 | -0.473 | -- | 1.79 | 0.0444 | 8.14 | 50.45 | 6 | -- | -- |
| 37.2 | 0.284 | 2.87 | -0.0118 | 0.0609 | -0.216 | -- | -- | 0.0385 | 7.99 | 51.3 | 6 | -- | -- |
| 35.95 | 0.279 | 2.88 | 0.00288 | -- | -0.474 | -- | 1.8 | 0.0452 | -- | 50.51 | 6 | -- | -- |
| 37.61 | 0.288 | 2.87 | -0.00371 | 0.0629 | -- | -0.226 | -- | 0.0297 | 8.76 | -- | -- | -- | -- |
| 37.78 | 0.288 | 2.87 | -0.0108 | 0.0633 | -- | -- | -- | 0.0299 | 9.32 | -- | -- | -- | -- |
| 37.4 | 0.285 | 2.87 | -0.0112 | -- | -0.216 | -- | -- | 0.0392 | -- | 51.4 | 6 | -- | -- |
| 37.2 | 0.284 | 2.87 | -- | 0.0609 | -0.216 | -- | -- | 0.0397 | 7.98 | 51.4 | 6 | -- | -- |
| 38.01 | 0.288 | 2.87 | -0.0111 | -- | -- | -- | -- | 0.0302 | -- | -- | -- | -- | -- |
| 37.78 | 0.288 | 2.87 | -- | 0.0633 | -- | -- | -- | 0.0311 | 9.34 | -- | -- | -- | -- |
| 37.4 | 0.285 | 2.87 | -- | -- | -0.216 | -- | -- | 0.0405 | -- | 51.4 | 6 | -- | -- |
| 38.01 | 0.288 | 2.87 | -- | -- | -- | -- | -- | 0.0314 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.24 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 22 | 8 |
| 2 | 33.26 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 17 | 33.70 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 29 | 33.70 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 45 | 34.04 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 46 | 34.05 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 47 | 34.09 | humidity | 90.0 | 10 | > th | dose independent | rect. | 17 | 1 |
| 57 | 34.09 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 67 | 34.11 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 95 | 34.11 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 130 | 34.36 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 133 | 34.43 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 134 | 34.43 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 137 | 34.55 | wind | 9.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 171 | 34.81 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 211 | 34.92 | wind | 9.0 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 290 | 35.05 | atmosphere | 1010.0 | 30 | > th | dose dependent | sin | 23 | NA |
| 292 | 35.07 | humidity | 50.0 | 10 | > th | dose independent | sin | 8 | NA |
| 563 | 35.18 | humidity | 50.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 591 | 35.25 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 711 | 35.34 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 715 | 35.34 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 767 | 35.34 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 771 | 35.34 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 850 | 35.44 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 855 | 35.47 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 858 | 35.48 | temperature | 25.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 859 | 35.48 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 860 | 35.49 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 862 | 35.50 | wind | 9.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 864 | 35.50 | wind | 1.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 869 | 35.51 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 874 | 35.52 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 875 | 35.52 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 878 | 35.53 | wind | 9.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 879 | 35.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 883 | 35.53 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 887 | 35.53 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 892 | 35.53 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 893 | 35.53 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 895 | 35.53 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 897 | 35.53 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 911 | 35.54 | wind | 1.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 913 | 35.54 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 934 | 35.55 | wind | 5.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 937 | 35.55 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 940 | 35.55 | temperature | 30.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 941 | 35.55 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 947 | 35.55 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 948 | 35.55 | radiation | 1.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 949 | 35.55 | radiation | 20.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 952 | 35.55 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 1 |
| 953 | 35.55 | temperature | 10.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 954 | 35.55 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 970 | 35.58 | wind | 9.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 972 | 35.58 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 985 | 35.60 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 989 | 35.60 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 999 | 35.62 | humidity | 60.0 | 720 | > th | dose independent | rect. | 21 | 14 |