BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0158500 Os01g0158500|J065005P06
         (80 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0158500  Arginyl-tRNA synthetase, class Ic family protein    166   2e-42
Os05g0163000  Arginyl-tRNA synthetase, class Ic family protein    145   7e-36

>Os01g0158500 Arginyl-tRNA synthetase, class Ic family protein
          Length = 80

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MLVCGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHIRSTIIGDTLAHMFEFTNVEVLRRN 60
          MLVCGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHIRSTIIGDTLAHMFEFTNVEVLRRN
Sbjct: 1  MLVCGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHIRSTIIGDTLAHMFEFTNVEVLRRN 60

Query: 61 HVGDWGTQVLNLNVLIFKQF 80
          HVGDWGTQVLNLNVLIFKQF
Sbjct: 61 HVGDWGTQVLNLNVLIFKQF 80



>Os05g0163000 Arginyl-tRNA synthetase, class Ic family protein
          Length = 606

 Score =  145 bits (365), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 67/80 (83%), Positives = 72/80 (90%)

Query: 1   MLVCGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHIRSTIIGDTLAHMFEFTNVEVLRRN 60
           MLV GIKTWAPILPVKRAVLDFSSPNIAKEMHVGH+RSTIIGDTLA MFEF+NVEVLRRN
Sbjct: 125 MLVNGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHLRSTIIGDTLARMFEFSNVEVLRRN 184

Query: 61  HVGDWGTQVLNLNVLIFKQF 80
           HVGDWGTQ   L   +F++F
Sbjct: 185 HVGDWGTQFGMLIQYLFEKF 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,462,464
Number of extensions: 75989
Number of successful extensions: 190
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 17,035,801
Length adjustment: 51
Effective length of query: 29
Effective length of database: 14,372,887
Effective search space: 416813723
Effective search space used: 416813723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)