Os01g0158500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Arginyl-tRNA synthetase, class Ic family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0158500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Arginyl-tRNA synthetase, class Ic family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.82 | 0.594 | 7.44 | -1.34 | 0.748 | -2.08 | 0.783 | -0.00135 | 0.278 | 1.12 | 22.8 | 853 | -- | -- |
| 159.82 | 0.589 | 7.44 | -1.34 | 0.749 | -2.08 | 0.785 | -- | 0.278 | 1.12 | 22.8 | 854 | -- | -- |
| 162.2 | 0.593 | 7.43 | -1.3 | 0.748 | -2.11 | -- | 0.422 | 0.294 | 1.16 | 22.8 | 851 | -- | -- |
| 162.34 | 0.593 | 7.45 | -1.37 | 0.744 | -2.06 | -- | -- | 0.272 | 1.24 | 22.74 | 853 | -- | -- |
| 184.01 | 0.632 | 7.43 | -1.36 | -- | -1.74 | -- | -0.172 | 0.289 | -- | 22.83 | 1773 | -- | -- |
| 261.91 | 0.759 | 7.5 | -1.93 | 0.654 | -- | 0.511 | -- | -0.0607 | 4.57 | -- | -- | -- | -- |
| 262.59 | 0.759 | 7.51 | -1.93 | 0.659 | -- | -- | -- | -0.0634 | 4.66 | -- | -- | -- | -- |
| 183.96 | 0.632 | 7.43 | -1.31 | -- | -1.76 | -- | -- | 0.3 | -- | 23 | 1770 | -- | -- |
| 209.06 | 0.673 | 7.42 | -- | 0.828 | -2.28 | -- | -- | 0.439 | 1.78 | 22.66 | 934 | -- | -- |
| 285.65 | 0.79 | 7.51 | -1.9 | -- | -- | -- | -- | -0.0461 | -- | -- | -- | -- | -- |
| 360.62 | 0.888 | 7.46 | -- | 0.623 | -- | -- | -- | 0.151 | 4.74 | -- | -- | -- | -- |
| 224.99 | 0.699 | 7.38 | -- | -- | -2.09 | -- | -- | 0.516 | -- | 22.65 | 1764 | -- | -- |
| 381.22 | 0.911 | 7.46 | -- | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 162.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 5 | 163.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 21 | 164.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 39 | 165.12 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 42 | 165.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 17 |
| 52 | 165.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 55 | 165.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 17 |
| 78 | 165.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 91 | 165.72 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 119 | 166.00 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 161 | 166.26 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 206 | 166.48 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 227 | 166.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 287 | 166.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 314 | 166.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 690 | 168.03 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 699 | 168.05 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 703 | 168.05 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 718 | 168.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 862 | 168.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 911 | 168.88 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 928 | 168.94 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 20 |