BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0158500 Os01g0158500|J065005P06
         (80 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G66530.1  | chr1:24819064-24822277 REVERSE LENGTH=591          130   1e-31
AT4G26300.1  | chr4:13308400-13313109 REVERSE LENGTH=643          129   4e-31

>AT1G66530.1 | chr1:24819064-24822277 REVERSE LENGTH=591
          Length = 590

 Score =  130 bits (327), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/80 (75%), Positives = 67/80 (83%)

Query: 1   MLVCGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHIRSTIIGDTLAHMFEFTNVEVLRRN 60
           MLV GI TWAP L VKRAV+DFSSPNIAKEMHVGH+RSTIIGDTLA M E++ VEVLRRN
Sbjct: 114 MLVDGIDTWAPTLSVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEYSKVEVLRRN 173

Query: 61  HVGDWGTQVLNLNVLIFKQF 80
           HVGDWGTQ   L   +F++F
Sbjct: 174 HVGDWGTQFGMLIEFLFEKF 193



>AT4G26300.1 | chr4:13308400-13313109 REVERSE LENGTH=643
          Length = 642

 Score =  129 bits (323), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/80 (72%), Positives = 68/80 (85%)

Query: 1   MLVCGIKTWAPILPVKRAVLDFSSPNIAKEMHVGHIRSTIIGDTLAHMFEFTNVEVLRRN 60
           ML+ G+ TWAP L VKRAV+DFSSPNIAKEMHVGH+RSTIIGDTLA M E+++VEVLRRN
Sbjct: 166 MLIDGVDTWAPTLSVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEYSHVEVLRRN 225

Query: 61  HVGDWGTQVLNLNVLIFKQF 80
           HVGDWGTQ   L   +F++F
Sbjct: 226 HVGDWGTQFGMLIEYLFEKF 245



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,652,890
Number of extensions: 52487
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 11,106,569
Length adjustment: 52
Effective length of query: 28
Effective length of database: 9,680,937
Effective search space: 271066236
Effective search space used: 271066236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)