Os05g0163000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Arginyl-tRNA synthetase, class Ic family protein.
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Os05g0163000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Arginyl-tRNA synthetase, class Ic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.06 | 0.182 | 12.7 | -0.0822 | 0.622 | -0.779 | -0.115 | 0.788 | 0.0194 | 0.0895 | 13.78 | 1183 | -- | -- |
| 15.24 | 0.182 | 12.7 | -0.0825 | 0.549 | -0.771 | -0.0149 | -- | 0.046 | 23.9 | 10.5 | 7408 | -- | -- |
| 15.11 | 0.181 | 12.7 | -0.0906 | 0.623 | -0.779 | -- | 0.725 | 0.0168 | 0.0785 | 13.81 | 1184 | -- | -- |
| 15.24 | 0.182 | 12.7 | -0.084 | 0.55 | -0.767 | -- | -- | 0.0473 | 24 | 10.43 | 7401 | -- | -- |
| 25.74 | 0.238 | 12.7 | -0.117 | -- | -1.08 | -- | 1.08 | 0.0297 | -- | 13.81 | 1184 | -- | -- |
| 25.02 | 0.234 | 12.8 | -0.477 | 0.532 | -- | -0.0679 | -- | -0.16 | 23.9 | -- | -- | -- | -- |
| 25.04 | 0.234 | 12.8 | -0.474 | 0.532 | -- | -- | -- | -0.159 | 23.9 | -- | -- | -- | -- |
| 26.73 | 0.242 | 12.7 | -0.266 | -- | -1.06 | -- | -- | -0.0113 | -- | 13.97 | 1624 | -- | -- |
| 15.38 | 0.183 | 12.7 | -- | 0.551 | -0.811 | -- | -- | 0.066 | 24 | 11.66 | 7417 | -- | -- |
| 42.88 | 0.306 | 12.8 | -0.458 | -- | -- | -- | -- | -0.152 | -- | -- | -- | -- | -- |
| 30.97 | 0.26 | 12.8 | -- | 0.526 | -- | -- | -- | -0.106 | 23.9 | -- | -- | -- | -- |
| 28.48 | 0.249 | 12.7 | -- | -- | -1.14 | -- | -- | 0.0276 | -- | 11.66 | 7417 | -- | -- |
| 48.42 | 0.325 | 12.8 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.39 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 2 | 14.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 40 | 14.62 | temperature | 20 | 1440 | > th | dose dependent | sin | 21 | NA |
| 68 | 14.70 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 102 | 14.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 278 | 14.90 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 292 | 14.92 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 330 | 14.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 440 | 15.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 458 | 15.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 493 | 15.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 520 | 15.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 560 | 15.12 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 561 | 15.12 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 562 | 15.12 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 563 | 15.12 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 583 | 15.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 584 | 15.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 595 | 15.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 602 | 15.15 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 603 | 15.15 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 22 |
| 621 | 15.15 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 634 | 15.16 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 659 | 15.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 661 | 15.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 23 |
| 674 | 15.17 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 2 |
| 733 | 15.19 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 775 | 15.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 792 | 15.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 798 | 15.21 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 800 | 15.21 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 807 | 15.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 833 | 15.22 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 837 | 15.22 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 903 | 15.24 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 906 | 15.24 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 908 | 15.24 | wind | 5 | 43200 | > th | dose dependent | sin | 14 | NA |
| 914 | 15.24 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 936 | 15.25 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 939 | 15.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |