BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0156300 Os01g0156300|AK107993
(190 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0156300 Similar to Cappuccino protein 324 2e-89
Os01g0156400 202 1e-52
Os01g0156800 134 3e-32
Os01g0157100 107 6e-24
Os03g0373066 92 2e-19
Os03g0373300 Protein of unknown function DUF1110 family pro... 65 3e-11
>Os01g0156300 Similar to Cappuccino protein
Length = 190
Score = 324 bits (830), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/190 (90%), Positives = 172/190 (90%)
Query: 1 MAAEAWXXXXXXXXXXXXXXXXXXGESLATALTHLKSPMHAGDEEEAAAARTRIQLAMGE 60
MAAEAW GESLATALTHLKSPMHAGDEEEAAAARTRIQLAMGE
Sbjct: 1 MAAEAWRSRFRERVVEAAERWESVGESLATALTHLKSPMHAGDEEEAAAARTRIQLAMGE 60
Query: 61 LVDASRNLASAMSLMKVAELLALHGGSVNPSTHLGEISLLGDQYLAERNAGIKLLEAGKD 120
LVDASRNLASAMSLMKVAELLALHGGSVNPSTHLGEISLLGDQYLAERNAGIKLLEAGKD
Sbjct: 61 LVDASRNLASAMSLMKVAELLALHGGSVNPSTHLGEISLLGDQYLAERNAGIKLLEAGKD 120
Query: 121 ARKAYISVDGCRGNLDAILLLLDHPRVPCVDDFIEEELFVAGDNLQGAIGNAKLGTERAV 180
ARKAYISVDGCRGNLDAILLLLDHPRVPCVDDFIEEELFVAGDNLQGAIGNAKLGTERAV
Sbjct: 121 ARKAYISVDGCRGNLDAILLLLDHPRVPCVDDFIEEELFVAGDNLQGAIGNAKLGTERAV 180
Query: 181 GARQDVSGAN 190
GARQDVSGAN
Sbjct: 181 GARQDVSGAN 190
>Os01g0156400
Length = 190
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/190 (64%), Positives = 134/190 (70%)
Query: 1 MAAEAWXXXXXXXXXXXXXXXXXXGESLATALTHLKSPMHAGDEEEAAAARTRIQLAMGE 60
MAAEAW E LATAL H+ SPM A DEE AAAARTRIQLAMG+
Sbjct: 1 MAAEAWRARFRERVVEAAGRWERVREGLATALAHVTSPMLAADEEAAAAARTRIQLAMGQ 60
Query: 61 LVDASRNLASAMSLMKVAELLALHGGSVNPSTHLGEISLLGDQYLAERNAGIKLLEAGKD 120
L DASR+LASAMSLMK A+LLALHG SVNPST LG I LG QYLAER A KL EA +D
Sbjct: 61 LEDASRDLASAMSLMKAADLLALHGDSVNPSTFLGGIGHLGAQYLAERIAVTKLREAWED 120
Query: 121 ARKAYISVDGCRGNLDAILLLLDHPRVPCVDDFIEEELFVAGDNLQGAIGNAKLGTERAV 180
AR AY +V+ CR +LDAILL+LDHP +P VD IEE+ A LQ AIG A+LG ERAV
Sbjct: 121 ARDAYTNVEWCRSHLDAILLMLDHPHLPSVDGLIEEDRAAADGFLQAAIGRAELGNERAV 180
Query: 181 GARQDVSGAN 190
ARQDVSGAN
Sbjct: 181 DARQDVSGAN 190
>Os01g0156800
Length = 186
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/140 (55%), Positives = 96/140 (68%), Gaps = 8/140 (5%)
Query: 51 RTRIQLAMGELVDASRNLASAMSLMKVAELLALHGGSVNPSTHLGEISLLGDQYLAERNA 110
R RIQ +G L +AS +LA AMS+M A+LL S +G I LGDQY E NA
Sbjct: 55 RDRIQRVLGALGEASSDLAFAMSVMNGAKLLVF-------SDVIG-IEQLGDQYFPEGNA 106
Query: 111 GIKLLEAGKDARKAYISVDGCRGNLDAILLLLDHPRVPCVDDFIEEELFVAGDNLQGAIG 170
G+ L ++ +D +A+ VD CR +LDA+LLLLDHPR+P VD I+EEL A +LQ AIG
Sbjct: 107 GVVLHDSVEDVEEAFAMVDSCRSHLDAVLLLLDHPRLPGVDGLIQEELAAADGDLQAAIG 166
Query: 171 NAKLGTERAVGARQDVSGAN 190
NA+LGTE AVGARQDVSGAN
Sbjct: 167 NAELGTELAVGARQDVSGAN 186
>Os01g0157100
Length = 208
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 104/190 (54%), Gaps = 4/190 (2%)
Query: 1 MAAEAWXXXXXXXXXXXXXXXXXXGESLA-TALTHLKSPMHAGDEEEAAAARTRIQLAMG 59
MA EAW E L A HL++ M GD AAA R RIQLA G
Sbjct: 1 MAEEAWRERFRQRVAEVDDLFVEAFELLVDNARIHLEAQMLVGDA--AAAERARIQLAQG 58
Query: 60 ELVDASRNLASAMSLMKVAELLALHGGSVNPSTHLGEISLLGDQYLAERNAGIKLLEAGK 119
L DAS LASAMSLM A+LL L GGS +P +I LGD+Y AE+NA KL A +
Sbjct: 59 ALEDASGKLASAMSLMVGAKLLVLRGGSHDPLMPYHDIGHLGDEYAAEKNACAKLRGAER 118
Query: 120 DARKAYISVDGCRGNLDAILLLLDHPRVPCVDDFIE-EELFVAGDNLQGAIGNAKLGTER 178
+A +A + C G+L+ I LLLDH +P V+D IE E L A D+L AIG + G +
Sbjct: 119 EAEEACARIGMCSGHLETISLLLDHENLPGVNDLIENERLDAAVDDLLAAIGKVESGKKM 178
Query: 179 AVGARQDVSG 188
A AR D +G
Sbjct: 179 ANDARLDSAG 188
>Os03g0373066
Length = 328
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 69/117 (58%), Gaps = 34/117 (29%)
Query: 77 VAELLALHGGSVNPSTHLGEISLLGDQYLAERNAGI--KLLEAGKDARKAYISVDGCRGN 134
VAELLALH GSVNPST LGEI LLG R+ + KL EAGKD GC
Sbjct: 22 VAELLALHDGSVNPSTRLGEIGLLG----TSRSGTLEPKLHEAGKDQ-------PGC--- 67
Query: 135 LDAILLLLDHP------RVPCVDDFIEEELFVAGDNLQGAIGNAKLGTERAVGARQD 185
D P RVP V EEELF A DNLQGAIGNAKLGTERAVGARQD
Sbjct: 68 --------DPPSAGPSARVPGV----EEELFAADDNLQGAIGNAKLGTERAVGARQD 112
>Os03g0373300 Protein of unknown function DUF1110 family protein
Length = 146
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 85 GGSVNPST--HLGEISLLGDQYLAERNAGIKLLEAGKDARKAYISVDGCRGNLDAILLLL 142
G S++ +T L + LL YLAE++A IKL A DARKAY VDGCRG+LDA LLLL
Sbjct: 38 GSSLSAATASTLLSVRLLRVNYLAEQSAAIKLSYAESDARKAYALVDGCRGHLDAALLLL 97
Query: 143 DHP-RVPCVDDFIEEELFVAGDNLQGAIGNAKLGTERAVGARQDVSGAN 190
DH R+P V I E A +L+ AI + E A ARQDVSGA+
Sbjct: 98 DHVGRLPDVQGMINAERLAAVADLEAAIVAVQRSAEMATAARQDVSGAS 146
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,475,822
Number of extensions: 207331
Number of successful extensions: 531
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 6
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)