BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0149800 Os01g0149800|U43530
         (82 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0149800  Metallothionein-like protein type 2                  75   9e-15
Os01g0149200  Similar to Metallothionein-like protein type 2       72   9e-14

>Os01g0149800 Metallothionein-like protein type 2
          Length = 82

 Score = 75.5 bits (184), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 40/59 (67%)

Query: 24 KMYPEMAEEVTTTQTVIMGVAPSKXXXXXXXXXXXXXXXXXXXCKCGDNCTCNPCNCGK 82
          KMYPEMAEEVTTTQTVIMGVAPSK                   CKCGDNCTCNPCNCGK
Sbjct: 24 KMYPEMAEEVTTTQTVIMGVAPSKGHAEGLEAGAAAGAGAENGCKCGDNCTCNPCNCGK 82



>Os01g0149200 Similar to Metallothionein-like protein type 2
          Length = 64

 Score = 72.0 bits (175), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 38/58 (65%)

Query: 25 MYPEMAEEVTTTQTVIMGVAPSKXXXXXXXXXXXXXXXXXXXCKCGDNCTCNPCNCGK 82
          MYP MAEEVTTTQTVIMGVAPSK                   CKCGDNCTCNPCNCGK
Sbjct: 1  MYPGMAEEVTTTQTVIMGVAPSKGHAEGLEAGAAAGAGAENGCKCGDNCTCNPCNCGK 58



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.130    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,319,598
Number of extensions: 19171
Number of successful extensions: 146
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 82
Length of database: 17,035,801
Length adjustment: 52
Effective length of query: 30
Effective length of database: 14,320,673
Effective search space: 429620190
Effective search space used: 429620190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)