Os01g0149800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Metallothionein-like protein type 2.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0149800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Metallothionein-like protein type 2.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.71 | 0.318 | 16.1 | -0.108 | 0.398 | -0.543 | 0.14 | 1.13 | -0.336 | 13.1 | 69.63 | 852 | -- | -- |
| 46.8 | 0.319 | 16.1 | 0.0489 | 0.184 | -0.484 | 0.49 | -- | -0.295 | 10.3 | 79.23 | 396 | -- | -- |
| 45.77 | 0.315 | 16.1 | -0.101 | 0.396 | -0.538 | -- | 1.2 | -0.332 | 13.1 | 69.08 | 856 | -- | -- |
| 47.73 | 0.322 | 16.1 | 0.0303 | 0.12 | -0.469 | -- | -- | -0.315 | 9.73 | 74.73 | 320 | -- | -- |
| 50.49 | 0.333 | 16.1 | 0.00192 | -- | -0.339 | -- | -0.138 | -0.303 | -- | 69.8 | 1744 | -- | -- |
| 51.99 | 0.338 | 16.1 | -0.00859 | 0.317 | -- | 0.257 | -- | -0.27 | 15.3 | -- | -- | -- | -- |
| 52.15 | 0.338 | 16.1 | -0.00357 | 0.322 | -- | -- | -- | -0.269 | 15.6 | -- | -- | -- | -- |
| 48.2 | 0.323 | 16.1 | 0.0209 | -- | -0.437 | -- | -- | -0.312 | -- | 74 | 265 | -- | -- |
| 47.75 | 0.322 | 16.1 | -- | 0.117 | -0.467 | -- | -- | -0.319 | 9.68 | 74.26 | 320 | -- | -- |
| 57.93 | 0.356 | 16.1 | -0.0171 | -- | -- | -- | -- | -0.277 | -- | -- | -- | -- | -- |
| 52.16 | 0.338 | 16.1 | -- | 0.322 | -- | -- | -- | -0.268 | 15.6 | -- | -- | -- | -- |
| 48.22 | 0.323 | 16.1 | -- | -- | -0.434 | -- | -- | -0.313 | -- | 74 | 269 | -- | -- |
| 57.93 | 0.355 | 16.1 | -- | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.41 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 3 | 42.74 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 8 | 43.01 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 11 | 43.06 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 7 |
| 18 | 43.39 | humidity | 90 | 270 | < th | dose independent | rect. | 9 | 15 |
| 20 | 43.53 | humidity | 80 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 23 | 43.61 | humidity | 90 | 720 | < th | dose independent | rect. | 11 | 10 |
| 26 | 43.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 46 | 43.88 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 8 |
| 48 | 43.92 | humidity | 80 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 57 | 44.03 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 13 |
| 60 | 44.08 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 4 |
| 79 | 44.18 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 18 |
| 83 | 44.21 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 212 | 44.74 | humidity | 80 | 720 | < th | dose independent | sin | 22 | NA |
| 224 | 44.78 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 16 |
| 248 | 44.88 | radiation | 1 | 720 | > th | dose independent | sin | 17 | NA |
| 252 | 44.89 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 253 | 44.89 | radiation | 10 | 720 | < th | dose dependent | sin | 19 | NA |
| 294 | 44.98 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 328 | 45.05 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 14 |
| 329 | 45.05 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 387 | 45.15 | humidity | 80 | 720 | > th | dose independent | rect. | 24 | 19 |
| 426 | 45.22 | humidity | 80 | 720 | > th | dose dependent | sin | 21 | NA |
| 472 | 45.30 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 22 |
| 518 | 45.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 527 | 45.41 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 1 |
| 571 | 45.48 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 16 |
| 585 | 45.50 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 639 | 45.58 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 20 |
| 648 | 45.59 | humidity | 70 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 674 | 45.63 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 18 |
| 707 | 45.68 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 12 |
| 712 | 45.68 | humidity | 90 | 90 | < th | dose independent | rect. | 9 | 22 |
| 750 | 45.72 | humidity | 70 | 720 | > th | dose dependent | rect. | 4 | 22 |
| 767 | 45.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 802 | 45.77 | humidity | 70 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 844 | 45.81 | humidity | 80 | 720 | > th | dose independent | rect. | 7 | 22 |
| 859 | 45.83 | humidity | 80 | 720 | > th | dose independent | sin | 18 | NA |
| 884 | 45.85 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 893 | 45.86 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 911 | 45.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 928 | 45.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 953 | 45.92 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 21 |
| 964 | 45.93 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |