Os01g0149200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Metallothionein-like protein type 2.
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Os01g0149200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Metallothionein-like protein type 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.59 | 0.357 | 16.5 | -0.0455 | 0.335 | -0.48 | -0.0351 | 1.48 | -0.346 | 13.6 | 70 | 870 | -- | -- |
| 59.95 | 0.361 | 16.5 | 0.0835 | 0.153 | -0.487 | 0.43 | -- | -0.362 | 9.34 | 68.99 | 435 | -- | -- |
| 57.56 | 0.353 | 16.5 | -0.0498 | 0.336 | -0.482 | -- | 1.49 | -0.345 | 13.6 | 68.87 | 875 | -- | -- |
| 59.93 | 0.361 | 16.5 | 0.138 | 0.122 | -0.46 | -- | -- | -0.336 | 10.7 | 79.9 | 388 | -- | -- |
| 59.54 | 0.359 | 16.5 | 0.103 | -- | -0.436 | -- | 0.545 | -0.331 | -- | 79.51 | 322 | -- | -- |
| 64.14 | 0.375 | 16.5 | 0.0836 | 0.285 | -- | 0.0355 | -- | -0.279 | 16.1 | -- | -- | -- | -- |
| 64.15 | 0.375 | 16.5 | 0.084 | 0.286 | -- | -- | -- | -0.279 | 16.1 | -- | -- | -- | -- |
| 60.31 | 0.362 | 16.5 | 0.129 | -- | -0.414 | -- | -- | -0.327 | -- | 79 | 296 | -- | -- |
| 60.4 | 0.362 | 16.5 | -- | 0.12 | -0.447 | -- | -- | -0.345 | 10.8 | 79 | 391 | -- | -- |
| 68.59 | 0.387 | 16.5 | 0.0724 | -- | -- | -- | -- | -0.287 | -- | -- | -- | -- | -- |
| 64.33 | 0.375 | 16.5 | -- | 0.284 | -- | -- | -- | -0.289 | 16.1 | -- | -- | -- | -- |
| 60.7 | 0.363 | 16.5 | -- | -- | -0.401 | -- | -- | -0.33 | -- | 75.04 | 294 | -- | -- |
| 68.73 | 0.387 | 16.5 | -- | -- | -- | -- | -- | -0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.26 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 2 | 55.33 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 6 |
| 3 | 55.36 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 11 | 55.50 | humidity | 80 | 720 | > th | dose dependent | rect. | 14 | 4 |
| 12 | 55.51 | humidity | 80 | 720 | > th | dose dependent | rect. | 11 | 7 |
| 15 | 55.58 | humidity | 90 | 270 | < th | dose independent | rect. | 9 | 15 |
| 16 | 55.67 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 2 |
| 17 | 55.68 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 5 |
| 19 | 55.74 | humidity | 90 | 720 | < th | dose independent | rect. | 11 | 10 |
| 20 | 55.74 | humidity | 80 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 22 | 55.80 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 4 |
| 41 | 56.05 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 5 |
| 62 | 56.26 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 65 | 56.27 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 13 |
| 74 | 56.36 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 147 | 56.78 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 1 |
| 149 | 56.81 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 8 |
| 185 | 56.91 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 258 | 57.19 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 20 |
| 267 | 57.23 | humidity | 90 | 720 | < th | dose independent | sin | 20 | NA |
| 293 | 57.32 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 369 | 57.52 | radiation | 10 | 720 | < th | dose dependent | sin | 19 | NA |
| 392 | 57.57 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 14 |
| 395 | 57.57 | humidity | 70 | 720 | > th | dose dependent | rect. | 23 | 21 |
| 421 | 57.63 | radiation | 10 | 720 | > th | dose independent | sin | 17 | NA |
| 458 | 57.71 | humidity | 90 | 270 | < th | dose independent | rect. | 9 | 22 |
| 464 | 57.72 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 539 | 57.81 | humidity | 70 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 568 | 57.85 | humidity | 90 | 270 | < th | dose independent | rect. | 5 | 20 |
| 572 | 57.85 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 573 | 57.86 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 622 | 57.91 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 15 |
| 639 | 57.93 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 697 | 58.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 732 | 58.03 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 11 |
| 757 | 58.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 12 |
| 801 | 58.10 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 17 |
| 845 | 58.14 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 21 |
| 884 | 58.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 892 | 58.19 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 894 | 58.20 | humidity | 80 | 720 | > th | dose independent | sin | 19 | NA |
| 914 | 58.21 | humidity | 90 | 30 | < th | dose independent | rect. | 9 | 22 |
| 931 | 58.22 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 954 | 58.24 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |