BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0144800 Os01g0144800|AK110697
(112 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0144800 Conserved hypothetical protein 162 5e-41
Os01g0145700 119 4e-28
Os01g0146000 98 1e-21
Os01g0145500 87 3e-18
Os01g0146700 Integrase, catalytic region domain containing ... 77 3e-15
Os01g0145400 72 1e-13
Os01g0145000 Conserved hypothetical protein 69 6e-13
Os01g0146500 63 4e-11
>Os01g0144800 Conserved hypothetical protein
Length = 112
Score = 162 bits (410), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/112 (77%), Positives = 87/112 (77%)
Query: 1 MAAEAGALMGADRREPEXXXXXXXXXXXXXXXXXXXXXXXXXFQPPPGGLLADTFYRLAL 60
MAAEAGALMGADRREPE FQPPPGGLLADTFYRLAL
Sbjct: 1 MAAEAGALMGADRREPEAGGGAAALGAVGIATVSVATTLAAVFQPPPGGLLADTFYRLAL 60
Query: 61 SGTFLGGMTLVGASVWVADNPAARRAAGKKLLYTAIPPLLAAMGLSVVALLW 112
SGTFLGGMTLVGASVWVADNPAARRAAGKKLLYTAIPPLLAAMGLSVVALLW
Sbjct: 61 SGTFLGGMTLVGASVWVADNPAARRAAGKKLLYTAIPPLLAAMGLSVVALLW 112
>Os01g0145700
Length = 107
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 72/103 (69%), Gaps = 4/103 (3%)
Query: 10 GADRREPEXXXXXXXXXXXXXXXXXXXXXXXXXFQPPPGGLLADTFYRLALSGTFLGGMT 69
GADRREPE +PPPG L+ADTFYRL L+G FLGG+
Sbjct: 8 GADRREPEATLGAVGIATVSAATAALAAAL----EPPPGSLVADTFYRLTLTGAFLGGVA 63
Query: 70 LVGASVWVADNPAARRAAGKKLLYTAIPPLLAAMGLSVVALLW 112
LVGAS+WVADNPAARRAAGKKLLYTA+PPLLAA+G+SV ALLW
Sbjct: 64 LVGASIWVADNPAARRAAGKKLLYTAVPPLLAAVGISVAALLW 106
>Os01g0146000
Length = 118
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 3 AEAGALMGADRREPEXXXXXXXXXXXXXXXXXXXXXXXXXFQPPPGGLLADTFYRLA--- 59
A A L+G RREPE F+P PGGL T+ LA
Sbjct: 2 AAAKLLLGDARREPEAKIASALGALGVAAISMATTLAAE-FEPSPGGLRTTTYNHLAVAG 60
Query: 60 LSGTFLGGMTLVGASVWVADNPAARRAAGKKLLYTAIPPLLAAMGLSVVALL 111
L+GTFLGG+ LVGASVWV+DNPAARRAAGKKLLY A PPLLAA+ LSV ALL
Sbjct: 61 LAGTFLGGVALVGASVWVSDNPAARRAAGKKLLYFAAPPLLAAVVLSVAALL 112
>Os01g0145500
Length = 107
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 55/75 (73%), Gaps = 6/75 (8%)
Query: 43 FQPPP--GGLLADTFYRL----ALSGTFLGGMTLVGASVWVADNPAARRAAGKKLLYTAI 96
FQPPP GGL T Y L+GTFLGG+ LVGASVWV+DNPAARR GKKLLY A+
Sbjct: 30 FQPPPAPGGLRTTTTYNHLAVAGLAGTFLGGVVLVGASVWVSDNPAARRGTGKKLLYAAV 89
Query: 97 PPLLAAMGLSVVALL 111
P LLAA+ LSV ALL
Sbjct: 90 PMLLAAVVLSVAALL 104
>Os01g0146700 Integrase, catalytic region domain containing protein
Length = 725
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 43 FQPP-PGGLLADTFYRLALSGTFLGGMTLVGASVWVADNPAA-RRAAGKKLLYTAIPPLL 100
F+P GG A+T+Y LAL+ TFL G+TL+GA VWV+D PAA RRAAGKKLLY AIPPL+
Sbjct: 50 FEPAVTGGFAANTYYNLALAVTFLAGVTLIGALVWVSDKPAARRRAAGKKLLYAAIPPLV 109
Query: 101 A 101
A
Sbjct: 110 A 110
>Os01g0145400
Length = 110
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 52/72 (72%), Gaps = 6/72 (8%)
Query: 44 QPPP--GGLLADTFYRLALSGTFLGGMTLVGASVWVADNPAARRAA-GKKLLYTAIPPLL 100
PPP GG +T+Y LAL G+FL GM VGA++WV+D+P RRAA GKK++ +I PL+
Sbjct: 42 DPPPAYGG---NTYYHLALVGSFLAGMGQVGAAIWVSDDPRGRRAAVGKKIMIASIAPLV 98
Query: 101 AAMGLSVVALLW 112
A+GL+ ALLW
Sbjct: 99 VAVGLTGAALLW 110
>Os01g0145000 Conserved hypothetical protein
Length = 116
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 46 PPGGLLADTFYRLALSGTFLGGMTLVGASVWVADNPAARRAA-GKKLLYTAIPPLLAAMG 104
PP G Y LAL G+FL GM VGA++WVAD+P RAA GKK++ +I PL+ A+G
Sbjct: 44 PPQGFAESACYDLALVGSFLAGMGQVGAAIWVADDPRGHRAAVGKKIMIASIAPLVVAIG 103
Query: 105 LSVVALLW 112
L+ ALLW
Sbjct: 104 LTGEALLW 111
>Os01g0146500
Length = 253
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
Query: 46 PPGGLLADT---FYRLALSGTFLGGMTLVGASVWVADNPAARR--AAGKKLLYTAIPPLL 100
PP L ++ +Y L LSGTFL GM L+GASVWV+D+ RR AG KLLY A PPL+
Sbjct: 39 PPRCALGNSMWYYYYLVLSGTFLAGMILIGASVWVSDDDPRRRRGCAGSKLLYAAAPPLI 98
Query: 101 -AAMGLSVVAL 110
A +GLS+ L
Sbjct: 99 VAVVGLSLWQL 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,430,929
Number of extensions: 113290
Number of successful extensions: 235
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 10
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)