Os01g0144800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0144800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 193.41 | 0.653 | 8.45 | 2.88 | 1.83 | 2.42 | 1.57 | -0.857 | 0.794 | 12.5 | 0.1984 | 332 | 14.9 | -- |
| 193.12 | 0.647 | 8.44 | 2.87 | 1.76 | 2.61 | 2.06 | -- | 0.811 | 12.5 | 0.1183 | 332 | 15.5 | -- |
| 197.52 | 0.655 | 8.43 | 2.86 | 2.02 | 2.32 | -- | -2.22 | 0.844 | 12.4 | 0.7827 | 331 | 14 | -- |
| 211.28 | 0.677 | 8.45 | 2.93 | 1.79 | 2.54 | -- | -- | 0.786 | 12.4 | 0.09933 | 322 | 15.2 | -- |
| 280.74 | 0.785 | 8.5 | 2.65 | -- | 0.222 | -- | -2.45 | 0.653 | -- | 0.1261 | 1655 | 15 | -- |
| 249.61 | 0.741 | 8.51 | 2.57 | 0.705 | -- | 1.95 | -- | 0.646 | 14 | -- | -- | -- | -- |
| 262.56 | 0.759 | 8.51 | 2.63 | 0.739 | -- | -- | -- | 0.659 | 14.9 | -- | -- | -- | -- |
| 251.87 | 0.739 | 8.54 | 2.58 | -- | 1.38 | -- | -- | 0.69 | -- | 66.05 | 450 | 17.9 | -- |
| 417.6 | 0.952 | 8.52 | -- | 1.76 | 1.77 | -- | -- | 0.458 | 12.4 | 7.212 | 367 | 13.7 | -- |
| 294.06 | 0.801 | 8.51 | 2.6 | -- | -- | -- | -- | 0.64 | -- | -- | -- | -- | -- |
| 444.42 | 0.986 | 8.57 | -- | 0.687 | -- | -- | -- | 0.367 | 14.9 | -- | -- | -- | -- |
| 439.72 | 0.977 | 8.56 | -- | -- | 0.989 | -- | -- | 0.423 | -- | 78.67 | 469 | 18.4 | -- |
| 471.73 | 1.01 | 8.57 | -- | -- | -- | -- | -- | 0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.67 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 2 |
| 2 | 194.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 7 | 198.08 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 14 |
| 10 | 198.15 | radiation | 1 | 270 | < th | dose dependent | rect. | 11 | 13 |
| 14 | 198.55 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 1 |
| 17 | 198.55 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 29 | 199.39 | radiation | 1 | 270 | < th | dose dependent | sin | 20 | NA |
| 57 | 201.08 | radiation | 1 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 63 | 201.29 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 72 | 201.74 | radiation | 1 | 270 | < th | dose independent | sin | 19 | NA |
| 107 | 203.34 | temperature | 15 | 270 | > th | dose independent | rect. | 4 | 21 |
| 115 | 203.79 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 7 |
| 145 | 205.25 | humidity | 70 | 270 | > th | dose independent | rect. | 13 | 11 |
| 193 | 206.99 | temperature | 15 | 10 | > th | dose independent | rect. | 20 | 7 |
| 200 | 207.27 | temperature | 15 | 10 | > th | dose independent | rect. | 6 | 21 |
| 229 | 208.49 | radiation | 1 | 270 | > th | dose independent | sin | 20 | NA |
| 240 | 208.97 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 19 |
| 249 | 209.14 | humidity | 50 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 294 | 210.25 | humidity | 70 | 270 | > th | dose independent | rect. | 6 | 18 |
| 296 | 210.29 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 298 | 210.40 | humidity | 50 | 270 | > th | dose dependent | rect. | 13 | 11 |
| 322 | 210.98 | humidity | 60 | 90 | > th | dose dependent | rect. | 13 | 13 |
| 366 | 211.67 | radiation | 10 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 393 | 212.03 | atmosphere | 995 | 270 | > th | dose independent | rect. | 4 | 21 |
| 409 | 212.31 | humidity | 50 | 270 | > th | dose independent | rect. | 4 | 21 |
| 428 | 212.65 | atmosphere | 995 | 270 | > th | dose independent | rect. | 5 | 19 |
| 465 | 213.04 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 20 | 7 |
| 466 | 213.04 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 13 |
| 478 | 213.28 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 485 | 213.35 | wind | 1 | 270 | > th | dose independent | rect. | 24 | 5 |
| 495 | 213.46 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 7 |
| 496 | 213.47 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 518 | 213.70 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 7 |
| 546 | 213.99 | radiation | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 591 | 214.33 | radiation | 1 | 270 | < th | dose independent | rect. | 24 | 11 |
| 596 | 214.34 | humidity | 60 | 10 | > th | dose dependent | rect. | 15 | 11 |
| 604 | 214.40 | radiation | 1 | 90 | < th | dose independent | rect. | 2 | 8 |
| 636 | 214.62 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 667 | 214.87 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 18 | 6 |
| 721 | 215.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 728 | 215.19 | wind | 9 | 270 | < th | dose independent | rect. | 4 | 21 |
| 729 | 215.19 | radiation | 1 | 270 | < th | dose dependent | rect. | 24 | 11 |
| 754 | 215.35 | atmosphere | 995 | 10 | > th | dose independent | rect. | 6 | 21 |
| 766 | 215.41 | humidity | 70 | 270 | > th | dose independent | sin | 17 | NA |
| 790 | 215.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 9 |
| 806 | 215.68 | wind | 9 | 270 | < th | dose independent | rect. | 5 | 19 |
| 814 | 215.71 | atmosphere | 995 | 270 | > th | dose independent | rect. | 17 | 7 |
| 842 | 215.86 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 9 |
| 905 | 216.25 | temperature | 15 | 270 | > th | dose independent | rect. | 5 | 9 |
| 929 | 216.34 | temperature | 10 | 270 | > th | dose independent | rect. | 1 | 3 |
| 931 | 216.34 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 3 |
| 932 | 216.34 | humidity | 50 | 270 | > th | dose independent | rect. | 1 | 3 |
| 935 | 216.34 | atmosphere | 995 | 270 | > th | dose independent | rect. | 1 | 3 |
| 936 | 216.34 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 1 | 3 |
| 938 | 216.34 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 3 |
| 949 | 216.36 | wind | 9 | 270 | < th | dose independent | rect. | 1 | 3 |
| 963 | 216.44 | radiation | 10 | 10 | < th | dose independent | rect. | 3 | 3 |
| 970 | 216.47 | wind | 9 | 10 | < th | dose independent | rect. | 6 | 21 |
| 976 | 216.50 | temperature | 10 | 270 | > th | dose independent | rect. | 24 | 5 |
| 977 | 216.50 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 5 |
| 978 | 216.50 | humidity | 50 | 270 | > th | dose independent | rect. | 24 | 5 |
| 981 | 216.50 | atmosphere | 995 | 270 | > th | dose independent | rect. | 24 | 5 |
| 982 | 216.50 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 24 | 5 |
| 983 | 216.50 | radiation | 20 | 270 | < th | dose independent | rect. | 24 | 5 |
| 988 | 216.50 | radiation | 20 | 270 | < th | dose dependent | rect. | 24 | 5 |
| 993 | 216.51 | wind | 9 | 270 | < th | dose independent | rect. | 24 | 5 |