BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0144200 Os01g0144200|AK059740
(218 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0144200 Conserved hypothetical protein 455 e-128
Os03g0679000 Conserved hypothetical protein 445 e-125
>Os01g0144200 Conserved hypothetical protein
Length = 218
Score = 455 bits (1170), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MPVRVVDTATPSSQPTSGQDANAGHPSPPSCSLLSAGRCYAGTQNVSTIQKEEAWKVNVR 60
MPVRVVDTATPSSQPTSGQDANAGHPSPPSCSLLSAGRCYAGTQNVSTIQKEEAWKVNVR
Sbjct: 1 MPVRVVDTATPSSQPTSGQDANAGHPSPPSCSLLSAGRCYAGTQNVSTIQKEEAWKVNVR 60
Query: 61 INDCDLEQGYLCGTMEAVNVPLADTPVVTFWEGEIVDAKNYTFFTGKWEASPEDDIRHWS 120
INDCDLEQGYLCGTMEAVNVPLADTPVVTFWEGEIVDAKNYTFFTGKWEASPEDDIRHWS
Sbjct: 61 INDCDLEQGYLCGTMEAVNVPLADTPVVTFWEGEIVDAKNYTFFTGKWEASPEDDIRHWS 120
Query: 121 KFPSFTPLLSQIETDGGKSVDFSNYAYIFMRWKEQYFVNVGVDCGLTIAGFYYVCFSCSD 180
KFPSFTPLLSQIETDGGKSVDFSNYAYIFMRWKEQYFVNVGVDCGLTIAGFYYVCFSCSD
Sbjct: 121 KFPSFTPLLSQIETDGGKSVDFSNYAYIFMRWKEQYFVNVGVDCGLTIAGFYYVCFSCSD 180
Query: 181 GSISGYYYDPNSSPFQKLELKCTNEKDSGFTFSSYELQ 218
GSISGYYYDPNSSPFQKLELKCTNEKDSGFTFSSYELQ
Sbjct: 181 GSISGYYYDPNSSPFQKLELKCTNEKDSGFTFSSYELQ 218
>Os03g0679000 Conserved hypothetical protein
Length = 218
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/218 (97%), Positives = 215/218 (98%)
Query: 1 MPVRVVDTATPSSQPTSGQDANAGHPSPPSCSLLSAGRCYAGTQNVSTIQKEEAWKVNVR 60
MPVRVVDTATPSSQP+SGQDANAGHPSPPSCSLLSAGRCYAGTQNVS IQKEEAWKVNVR
Sbjct: 1 MPVRVVDTATPSSQPSSGQDANAGHPSPPSCSLLSAGRCYAGTQNVSNIQKEEAWKVNVR 60
Query: 61 INDCDLEQGYLCGTMEAVNVPLADTPVVTFWEGEIVDAKNYTFFTGKWEASPEDDIRHWS 120
I+ CDLEQGYLCGTMEA+NVPLADTPVVTFWEGEIVDAKNYTFFTGKWEASPEDDIRHWS
Sbjct: 61 IHGCDLEQGYLCGTMEALNVPLADTPVVTFWEGEIVDAKNYTFFTGKWEASPEDDIRHWS 120
Query: 121 KFPSFTPLLSQIETDGGKSVDFSNYAYIFMRWKEQYFVNVGVDCGLTIAGFYYVCFSCSD 180
KFPSFTPLLSQIETDGGKSVD SNYAYIFMRWKEQYFVNVGVDCGLTIAGFYYVCFSCSD
Sbjct: 121 KFPSFTPLLSQIETDGGKSVDLSNYAYIFMRWKEQYFVNVGVDCGLTIAGFYYVCFSCSD 180
Query: 181 GSISGYYYDPNSSPFQKLELKCTNEKDSGFTFSSYELQ 218
GSISGYYYDPNSSPFQKLELKCTNEKDSGFTFSSYELQ
Sbjct: 181 GSISGYYYDPNSSPFQKLELKCTNEKDSGFTFSSYELQ 218
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,713,698
Number of extensions: 370999
Number of successful extensions: 967
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 967
Number of HSP's successfully gapped: 2
Length of query: 218
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 121
Effective length of database: 11,971,043
Effective search space: 1448496203
Effective search space used: 1448496203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)