Os01g0144200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0144200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.99 | 0.282 | 9.74 | -0.688 | 0.535 | 0.336 | -0.279 | -2.56 | -0.25 | 3.26 | 1.617 | 1334 | -- | -- |
| 40 | 0.295 | 9.75 | -0.745 | 0.592 | 0.813 | -0.0325 | -- | -0.259 | 3.33 | 2.856e-05 | 1387 | -- | -- |
| 36.16 | 0.28 | 9.74 | -0.707 | 0.528 | 0.384 | -- | -2.41 | -0.249 | 3.08 | 1.627 | 1318 | -- | -- |
| 39.57 | 0.293 | 9.75 | -0.825 | 0.6 | 0.89 | -- | -- | -0.263 | 2.67 | 0.03551 | 1347 | -- | -- |
| 41.01 | 0.298 | 9.77 | -0.943 | -- | 1 | -- | -0.517 | -0.294 | -- | 0.4202 | 1930 | -- | -- |
| 45.94 | 0.318 | 9.79 | -1.1 | 0.517 | -- | -0.0229 | -- | -0.376 | 3.75 | -- | -- | -- | -- |
| 45.94 | 0.317 | 9.79 | -1.09 | 0.516 | -- | -- | -- | -0.376 | 3.74 | -- | -- | -- | -- |
| 40.95 | 0.298 | 9.77 | -0.922 | -- | 0.988 | -- | -- | -0.288 | -- | 0.3 | 1911 | -- | -- |
| 56.02 | 0.349 | 9.74 | -- | 0.608 | 1.34 | -- | -- | -0.156 | 2.32 | 0.00582 | 1362 | -- | -- |
| 60.67 | 0.364 | 9.79 | -1.07 | -- | -- | -- | -- | -0.362 | -- | -- | -- | -- | -- |
| 77.52 | 0.412 | 9.76 | -- | 0.495 | -- | -- | -- | -0.254 | 3.76 | -- | -- | -- | -- |
| 61.64 | 0.366 | 9.76 | -- | -- | 1.19 | -- | -- | -0.195 | -- | 0.009891 | 1885 | -- | -- |
| 91.06 | 0.445 | 9.76 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.74 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 2 | 35.74 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 3 | 35.97 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 4 | 36.06 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 5 | 36.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 10 | 36.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 11 | 36.12 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 12 | 36.13 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 24 | 36.33 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 40 | 36.49 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 65 | 36.70 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 70 | 36.76 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 78 | 36.82 | humidity | 80.0 | 720 | > th | dose independent | sin | 2 | NA |
| 84 | 36.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 93 | 36.94 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 103 | 37.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 108 | 37.04 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 18 |
| 109 | 37.05 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 110 | 37.05 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 122 | 37.08 | humidity | 80.0 | 720 | > th | dose independent | rect. | 3 | 14 |
| 135 | 37.14 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 138 | 37.16 | radiation | 1.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 145 | 37.17 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 180 | 37.25 | radiation | 1.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 184 | 37.25 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 191 | 37.26 | humidity | 80.0 | 720 | > th | dose independent | rect. | 1 | 17 |
| 219 | 37.31 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 224 | 37.32 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 235 | 37.34 | humidity | 80.0 | 720 | < th | dose independent | sin | 4 | NA |
| 312 | 37.43 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 488 | 37.73 | humidity | 80.0 | 720 | < th | dose independent | rect. | 24 | 19 |
| 515 | 37.75 | humidity | 80.0 | 720 | < th | dose independent | rect. | 6 | 13 |
| 580 | 37.84 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 653 | 37.96 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 696 | 38.03 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 825 | 38.15 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 875 | 38.16 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 899 | 38.18 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 920 | 38.20 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 926 | 38.20 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 931 | 38.20 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 954 | 38.22 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 958 | 38.23 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |