BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0125800 Os01g0125800|AK121927
(610 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0125800 Nitrous oxide reductase, N-terminal domain con... 1258 0.0
Os10g0104500 Similar to Notchless-related 79 1e-14
AK110547 75 2e-13
Os03g0685600 WD40-like domain containing protein 72 8e-13
Os01g0177100 Similar to STYLOSA protein 69 7e-12
>Os01g0125800 Nitrous oxide reductase, N-terminal domain containing protein
Length = 610
Score = 1258 bits (3254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/610 (100%), Positives = 610/610 (100%)
Query: 1 MAQLQETYACSPATERGRGILLAGDPKTETIAYCTGRSVIIRRLDAPLDCWAYPDHAYPT 60
MAQLQETYACSPATERGRGILLAGDPKTETIAYCTGRSVIIRRLDAPLDCWAYPDHAYPT
Sbjct: 1 MAQLQETYACSPATERGRGILLAGDPKTETIAYCTGRSVIIRRLDAPLDCWAYPDHAYPT 60
Query: 61 TVARFSPNGEWVASADASGCVRVWGRYGDRALKAEFRPLSGRVDDLRWSPDGLRIVVSGD 120
TVARFSPNGEWVASADASGCVRVWGRYGDRALKAEFRPLSGRVDDLRWSPDGLRIVVSGD
Sbjct: 61 TVARFSPNGEWVASADASGCVRVWGRYGDRALKAEFRPLSGRVDDLRWSPDGLRIVVSGD 120
Query: 121 GKGKSFVRAFVWDSGSTVGEFDGHSKRVLSCDFKPTRPFRIVTCGEDFLANYYEGPPFKF 180
GKGKSFVRAFVWDSGSTVGEFDGHSKRVLSCDFKPTRPFRIVTCGEDFLANYYEGPPFKF
Sbjct: 121 GKGKSFVRAFVWDSGSTVGEFDGHSKRVLSCDFKPTRPFRIVTCGEDFLANYYEGPPFKF 180
Query: 181 KHSIRDHSNFVNCIRYAPDGSKFISVSSDKKGLIYDGKTGDKIGELSSEGSHTGSIYAVS 240
KHSIRDHSNFVNCIRYAPDGSKFISVSSDKKGLIYDGKTGDKIGELSSEGSHTGSIYAVS
Sbjct: 181 KHSIRDHSNFVNCIRYAPDGSKFISVSSDKKGLIYDGKTGDKIGELSSEGSHTGSIYAVS 240
Query: 241 WSPDSKQVLTVSADKTAKVWDILEDASGKLNRTLACPGTGGVDDMLVGCLWQNDYLVTVS 300
WSPDSKQVLTVSADKTAKVWDILEDASGKLNRTLACPGTGGVDDMLVGCLWQNDYLVTVS
Sbjct: 241 WSPDSKQVLTVSADKTAKVWDILEDASGKLNRTLACPGTGGVDDMLVGCLWQNDYLVTVS 300
Query: 301 LGGTFNVFSASNPDKEPVTFAGHLKTVSSLAFFPQSNPKTILSTSYDGVIMRWIKGVGYG 360
LGGTFNVFSASNPDKEPVTFAGHLKTVSSLAFFPQSNPKTILSTSYDGVIMRWIKGVGYG
Sbjct: 301 LGGTFNVFSASNPDKEPVTFAGHLKTVSSLAFFPQSNPKTILSTSYDGVIMRWIKGVGYG 360
Query: 361 GRLMRKNNTQIKCFTVAEEELVTSGYDNKVFRIPLNGDQCGDAESVDVGGQPNALNLAIQ 420
GRLMRKNNTQIKCFTVAEEELVTSGYDNKVFRIPLNGDQCGDAESVDVGGQPNALNLAIQ
Sbjct: 361 GRLMRKNNTQIKCFTVAEEELVTSGYDNKVFRIPLNGDQCGDAESVDVGGQPNALNLAIQ 420
Query: 421 KPEFALVTTDSGIVLLHKSTVISTTKVNYTITSSAVSPDGTEAIVGAQDGKLRIYSINGD 480
KPEFALVTTDSGIVLLHKSTVISTTKVNYTITSSAVSPDGTEAIVGAQDGKLRIYSINGD
Sbjct: 421 KPEFALVTTDSGIVLLHKSTVISTTKVNYTITSSAVSPDGTEAIVGAQDGKLRIYSINGD 480
Query: 481 TVTEEALIEKHRGAITCIHYSPDVSMFASADANREAVVWDRATREIKLKNMLFHSARINC 540
TVTEEALIEKHRGAITCIHYSPDVSMFASADANREAVVWDRATREIKLKNMLFHSARINC
Sbjct: 481 TVTEEALIEKHRGAITCIHYSPDVSMFASADANREAVVWDRATREIKLKNMLFHSARINC 540
Query: 541 LAWSPDNRLVATGSLDTCAIVYEIDKPASSRITVKGAHLGGVHGLTFVDNDSLVTAGEDA 600
LAWSPDNRLVATGSLDTCAIVYEIDKPASSRITVKGAHLGGVHGLTFVDNDSLVTAGEDA
Sbjct: 541 LAWSPDNRLVATGSLDTCAIVYEIDKPASSRITVKGAHLGGVHGLTFVDNDSLVTAGEDA 600
Query: 601 CIRVWKLVPQ 610
CIRVWKLVPQ
Sbjct: 601 CIRVWKLVPQ 610
>Os10g0104500 Similar to Notchless-related
Length = 480
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 103/427 (24%), Positives = 166/427 (38%), Gaps = 80/427 (18%)
Query: 143 GHSKRVLSCDFKPTRPFRIVTCGE-DFLANYYEGPPFKFKHSIRDHSNFVNCIRYAPDGS 201
GH++ VL+ F P R + G D +++ + + H N+V CI ++PDG+
Sbjct: 113 GHTEAVLAVSFSPDG--RCLASGSGDTTVRFWDLSTQTPLFTCKGHKNWVLCIAWSPDGN 170
Query: 202 KFISVSSDKKGLIYDGKTGDKIGELSSEGSHTGSIYAVSWSP-----DSKQVLTVSADKT 256
+S S + +++D KTG ++G + H I AVSW P ++ ++ S D
Sbjct: 171 HLVSGSKSGELILWDPKTGKQLG--TPLTGHRKWITAVSWEPVHLQSPCRRFVSTSKDGD 228
Query: 257 AKVWDILEDASGKLNRTLACPGTGGVDDMLVGCL-WQNDYLV-TVSLGGTFNVFSASNPD 314
A++WD+ R TG + V C+ W D L+ T S + V+ S
Sbjct: 229 ARIWDMT-------TRKCVIALTGHTNS--VTCVKWGGDGLIYTGSEDCSIKVWETSQ-G 278
Query: 315 KEPVTFAGHLKTVSSLAFFPQSNPKTILSTSYDGVIMRWIKGVGYGGRLMRKNNTQIKCF 374
K T GH V+SLA LST Y ++R
Sbjct: 279 KLVKTLQGHGHWVNSLA----------LSTEY---VLR---------------------- 303
Query: 375 TVAEEELVTSGYDNKVFRIPLNGDQCGDAESVDVGGQPNALNLAIQKPEFALVTTDSGIV 434
T YD+ G AE + + PE + +D +
Sbjct: 304 --------TGAYDH-------TGKTYSTAEEMKEAALARYKKMRGNAPERLVSGSDDFTM 348
Query: 435 LLHKSTVISTTKVNYT-----ITSSAVSPDGTEAIVGAQDGKLRIYSINGDTVTEEALIE 489
L + T+ K T + SPDG + D ++++ NG T A
Sbjct: 349 FLWEPTISKQPKARMTGHQKLVNHVYFSPDGQWLASASFDKSVKLW--NGITGKFVAAFR 406
Query: 490 KHRGAITCIHYSPDVSMFASADANREAVVWDRATREIKLKNMLFHSARINCLAWSPDNRL 549
H + I +S D + S + VWD TR++K +++ H+ + + WSPD
Sbjct: 407 GHVADVYQISWSADSRLLLSGSKDSTLKVWDIRTRKLK-QDLPGHADEVYAVDWSPDGEK 465
Query: 550 VATGSLD 556
VA+G D
Sbjct: 466 VASGGKD 472
>AK110547
Length = 412
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/380 (24%), Positives = 154/380 (40%), Gaps = 50/380 (13%)
Query: 232 HTGSIYAVSWSPDSKQ-VLTVSADKTAKVWDILEDASGKLNRTLACPGTGGVDDMLVGCL 290
H ++ AV+WSP V T D A +W + ++A+ ++A G D +V
Sbjct: 75 HQDAVLAVAWSPTQPDLVATGGQDDKAFIWRVGQEAAEATGGSMATTELAGHTDTVVAAA 134
Query: 291 WQN--DYLVTVSLGGTFNVFSASNPD--KEPVTFAGHLKTVSSLAFFPQSNPKTILSTSY 346
+ L T SL + V+ ++ + P G V LA+ P+ + +L+ S
Sbjct: 135 FNTTGSLLATASLDSSVRVWRVADGSCVQAP---EGPGDGVDWLAWHPKGD--ILLAGSE 189
Query: 347 DGVIMRWIKGVGYGGRLMRKNNTQIKCFTVAEEELVTSGYDNKVFRIPLNGDQCGDAESV 406
D + W+ G C V SG+ V D V
Sbjct: 190 DFTMWMWLAQTG-------------NCMQV------FSGHSGPVTAGAFTPD---GKLVV 227
Query: 407 DVGGQPNALNLAIQKPEFALVTTDSGIVLLHKSTVISTTKVNYTITSSAVSPDGTEAIVG 466
VGG+ N +L + P+ T H+ + IT V PDG+ I G
Sbjct: 228 SVGGE-NDCSLRVWNPKTGECTVQLQGRPFHEDS----------ITCLGVHPDGSVVITG 276
Query: 467 AQDGKLRIYSINGDTVTEEALIEKHRGAITCIHYSPDVSMFASADANREAVVWDRATREI 526
AQDG +R+ +I+ + A ++ H ++ +S + + A+A + + ++WD
Sbjct: 277 AQDGSVRVSNIHNSRIV--ASLQGHEDSVEAAGFSRHLPLAATAGIDGKLIIWDCGN--F 332
Query: 527 KLKNMLFHSARINCLAWSPDNRLVATGSLDTCAIVYEIDKPASSRITVKGAHLGGVHGLT 586
+ + H I +AW+ LVATG LD +V D S+ + H V LT
Sbjct: 333 TERGVCQHEQPITRMAWASQQPLVATGCLD--GVVRLWDLRTSACVKQMHGHSSAVQDLT 390
Query: 587 FVDNDSLVTAG-EDACIRVW 605
F + S+V G +DA RV+
Sbjct: 391 FSPDGSMVLTGSDDATARVF 410
>Os03g0685600 WD40-like domain containing protein
Length = 394
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 123/311 (39%), Gaps = 25/311 (8%)
Query: 43 RLDAPLDCWAYPDHAYPTTVARFSPNGEWVASADASGCVRVWGRYGDRALKAEFRPLSGR 102
++ + D H FS +G +AS G + VW R L+
Sbjct: 93 KIGSAEDVLELAGHTDTVCTVAFSSDGNLLASGSFDGRINVW-NTATRTLQGTLEGSGSG 151
Query: 103 VDDLRWSPDGLRIVVSGDGKGKSFVRAFVW--DSGSTVGEFDGHSKRVLSCDFKPTRPFR 160
+ L+W P G I+ G ++W D + + F GHS V DF P
Sbjct: 152 FEWLKWHPRGHLIIA-----GSEDCNLWMWNADHNAILNTFAGHSSTVTCGDFTPDGKL- 205
Query: 161 IVTCGEDFLANYYEGPPFKFKHSIRDH---SNFVNCIRYAPDGSKFISVSSDKKGLIYDG 217
I T +D ++ + +H +R H ++ + C+ D +S S D + +
Sbjct: 206 ICTGSDDASLRIWDPRTAQSRHVVRGHGYHTDGLTCLSVTSDSQTIVSGSKDNSVCVVNI 265
Query: 218 KTGDKIGELSSEGSHTGSIYAVSWSPDSKQVLTVSADKTAKVWDILEDASGKLNRTLACP 277
+G +G L HTGSI V SP V T S D+ +WD+ G+ + C
Sbjct: 266 NSGQVVGSLDG---HTGSIECVGISPSYNWVATGSMDQKLIIWDL-----GRQSIRCTCN 317
Query: 278 GTGGVDDMLVGCLWQNDYLVTVSLGGTFNVFSASNPDKEPVTFAGHLKTVSSLAFFPQSN 337
GV + L + ++ + + G ++ + + + FAGH V SLA N
Sbjct: 318 HDEGVTSL--AWLGPSRFVASGCIDGMVRIWDSLSGECVRA-FAGHGDVVQSLAVSADGN 374
Query: 338 PKTILSTSYDG 348
+I+S S DG
Sbjct: 375 --SIVSVSTDG 383
>Os01g0177100 Similar to STYLOSA protein
Length = 875
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 129/293 (44%), Gaps = 24/293 (8%)
Query: 64 RFSPNGEWVASADASGCVRVWGRYGDRALKAEFRPLSGRVDDLRWSPDGLRIVVSGDGKG 123
FS +G+ +A+ V +W + K+ S + D+R+SP R+ S K
Sbjct: 603 HFSSDGKLLATGGHDKKVVLWHAETLKQ-KSVLEEHSLLITDVRFSPSIPRLATSSFDKT 661
Query: 124 KSFVRAFVWDS---GSTVGEFDGHSKRVLSCDFKPTRPFRIVTCGEDFLANYYEGPPFKF 180
VR VWD+ G ++ F GHS V+S DF P + I +C D ++
Sbjct: 662 ---VR--VWDADNQGYSIRTFTGHSASVMSLDFHPNKDDLICSCDGDNEIRFWS---INN 713
Query: 181 KHSIRDHSNFVNCIRYAPDGSKFISVSSDKKGLIYDGKTGDKIGELSSEGSHTGSIYAVS 240
+ +R + +R+ P +++V+S+ I D +T + EG HT + +V
Sbjct: 714 GNIVRIFKGGSSQLRFQPRHGGYLAVASENAVSILDVETQACLRRF--EG-HTKHVDSVC 770
Query: 241 WSPDSKQVLTVSADKTAKVWDILEDASGKLNRTLACPGTGGVDDMLVGCLWQNDYLVTVS 300
W P + V++VS D T KVW + + + + L+C G+ C + Y +
Sbjct: 771 WDPSGEYVVSVSED-TVKVWSVNAGSDDRCVQELSCTGS-----KFHSCAFHPSYSSMLI 824
Query: 301 LGGTFNVFSASNPDKEPVTFAGHLKTVSSLAFFPQSNPKTILSTSYDGVIMRW 353
+G ++ + +T A H +++LA S+ + STS+D + W
Sbjct: 825 IGCYQSLELWDMSENRTMTLAAHDSLITALA---SSSSGLVASTSHDKFVKLW 874
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,712,594
Number of extensions: 1014707
Number of successful extensions: 3380
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 3417
Number of HSP's successfully gapped: 7
Length of query: 610
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 503
Effective length of database: 11,448,903
Effective search space: 5758798209
Effective search space used: 5758798209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)