BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0122300 Os01g0122300|Os01g0122300
(305 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0122300 TRAF-like domain containing protein 221 6e-58
Os01g0122200 Seven in absentia protein family protein 72 6e-13
>Os01g0122300 TRAF-like domain containing protein
Length = 305
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/149 (77%), Positives = 116/149 (77%)
Query: 157 LLEHLAAAHSCHVDKVEYGKALCLRVPASERRRRLLVGEEDKRXXXXXXXXXXXXXXXXX 216
LLEHLAAAHSCHVDKVEYGKALCLRVPASERRRRLLVGEEDKR
Sbjct: 157 LLEHLAAAHSCHVDKVEYGKALCLRVPASERRRRLLVGEEDKRVFLLAMAAVGAASAVTL 216
Query: 217 XRVAASAETAARYRCKMWXXXXXXXXXXXXXXXSGKADMVMVDMEVASSGVAPGGVAVEE 276
RVAASAETAARYRCKMW SGKADMVMVDMEVASSGVAPGGVAVEE
Sbjct: 217 VRVAASAETAARYRCKMWANAPAAAAAAVAGAASGKADMVMVDMEVASSGVAPGGVAVEE 276
Query: 277 ATFLAVPPKMLHGEHKEIILGICIDKKTS 305
ATFLAVPPKMLHGEHKEIILGICIDKKTS
Sbjct: 277 ATFLAVPPKMLHGEHKEIILGICIDKKTS 305
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MVVAPEPEAIAVRIDMAMLHCPICFLPLKPPIFQVPCLLLQCLMLHPFLVSWLHSYESFL 60
MVVAPEPEAIAVRIDMAMLHCPICFLPLKPPIFQVPCLLLQCLMLHPFLVSWLHSYESFL
Sbjct: 1 MVVAPEPEAIAVRIDMAMLHCPICFLPLKPPIFQVPCLLLQCLMLHPFLVSWLHSYESFL 60
Query: 61 SLSIDLCSAMLGTWL 75
SLSIDLCSAMLGTWL
Sbjct: 61 SLSIDLCSAMLGTWL 75
>Os01g0122200 Seven in absentia protein family protein
Length = 337
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 75/156 (48%), Gaps = 21/156 (13%)
Query: 157 LLEHLAAAHSCHVDKVEYGKALCLRVPASERRRRLLVGE---EDKRXXXXXXXXXXXXXX 213
LL HL A HS V KV YG+ L + VP SERR ++ G +D+R
Sbjct: 186 LLAHLVADHSWPVSKVPYGEVLTIHVPESERRHLVVAGAAGGDDERVFVLSVGALGVARA 245
Query: 214 XXXXRVAASAETAARYRCKMWXXXXXXXXXXXXXXXSGKADMVMVDMEVASSGVAPGG-V 272
V A+A RYRCK+W G AD V +D VASS APGG V
Sbjct: 246 VSVACVRANAAAGPRYRCKLW----------AHAPGGGAADFVHMDSAVASSAAAPGGEV 295
Query: 273 AV-EEATFLAVPPKMLH----GEHKEII--LGICID 301
AV EEA FL VPP LH G KE++ L I ID
Sbjct: 296 AVDEEARFLTVPPCFLHLLDAGTSKEMLIRLSISID 331
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,933,293
Number of extensions: 212141
Number of successful extensions: 758
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 205
Effective length of database: 11,814,401
Effective search space: 2421952205
Effective search space used: 2421952205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 156 (64.7 bits)