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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0122200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Seven in absentia protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0219) R2 : 0.0194
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.138 (0.046) R2dN8 : 0.0251 R2N8 : 0.0194
σ : 0.412
deviance : 77.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.09 0.393 2.97 -0.217 0.0825 9.31 -0.295 -34.2 0.146 4.39 1.779 179 -- --
72.69 0.397 2.92 0.0711 0.0312 1.65 -0.371 -- 0.155 2.49 1.83 275 -- --
70.32 0.391 2.97 -0.214 0.0818 9.31 -- -34.1 0.148 4.68 1.775 183 -- --
71.83 0.395 2.92 -0.000253 0.0903 1.57 -- -- 0.142 4.86 1.5 241 -- --
70.67 0.392 2.97 -0.21 -- 9.28 -- -34.1 0.15 -- 1.777 182 -- --
77.17 0.412 2.92 0.034 0.056 -- -0.409 -- 0.139 4.57 -- -- -- --
77.6 0.413 2.92 0.0364 0.055 -- -- -- 0.141 3.34 -- -- -- --
72.19 0.396 2.92 0.00322 -- 1.54 -- -- 0.151 -- 1.5 234 -- --
71.83 0.395 2.92 -- 0.0845 1.58 -- -- 0.149 5.09 1.5 261 -- --
77.77 0.412 2.92 0.0387 -- -- -- -- 0.143 -- -- -- -- --
77.63 0.412 2.92 -- 0.0557 -- -- -- 0.137 3.34 -- -- -- --
72.19 0.396 2.92 -- -- 1.54 -- -- 0.151 -- 1.5 234 -- --
77.81 0.412 2.92 -- -- -- -- -- 0.138 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.27 temperature 25.0 90 > th dose independent rect. 1 3
2 67.33 temperature 25.0 90 > th dose dependent rect. 1 3
4 67.96 radiation 1.0 14400 < th dose dependent rect. 3 1
6 68.10 temperature 25.0 270 > th dose independent rect. 2 1
8 68.17 atmosphere 1005.0 30 > th dose dependent rect. 2 1
9 68.20 wind 3.0 30 < th dose dependent rect. 2 1
13 68.22 temperature 20.0 30 > th dose independent rect. 2 1
14 68.22 atmosphere 1005.0 30 > th dose independent rect. 2 1
19 68.24 wind 3.0 30 < th dose independent rect. 2 1
24 68.26 wind 9.0 1440 < th dose independent rect. 3 1
25 68.26 temperature 10.0 1440 > th dose independent rect. 3 1
28 68.26 temperature 30.0 1440 < th dose independent rect. 3 1
32 68.26 humidity 50.0 1440 > th dose independent rect. 3 1
41 68.26 atmosphere 995.0 1440 > th dose independent rect. 3 1
42 68.26 radiation 1.0 1440 < th dose independent rect. 3 1
62 68.26 temperature 10.0 1440 > th dose independent rect. 4 23
65 68.26 radiation 1.0 1440 < th dose dependent rect. 3 1
76 68.27 humidity 80.0 30 > th dose independent rect. 2 1
83 68.28 humidity 50.0 30 > th dose dependent rect. 2 1
88 68.29 temperature 10.0 30 > th dose independent rect. 2 1
90 68.29 temperature 25.0 30 < th dose independent rect. 2 1
92 68.29 humidity 50.0 30 > th dose independent rect. 2 1
97 68.29 atmosphere 1010.0 30 < th dose independent rect. 2 1
99 68.29 radiation 1.0 30 < th dose independent rect. 2 1
104 68.29 precipitation 0.1 30 < th dose independent rect. 2 1
105 68.29 temperature 10.0 30 > th dose independent rect. 3 23
107 68.29 radiation 1.0 30 < th dose dependent rect. 2 1
112 68.29 precipitation 0.1 30 < th dose dependent rect. 2 1
114 68.31 atmosphere 1000.0 30 > th dose independent rect. 3 23
118 68.42 atmosphere 1015.0 30 < th dose dependent rect. 2 1
120 68.51 temperature 30.0 30 < th dose dependent rect. 2 1
129 68.66 wind 1.0 30 > th dose independent rect. 2 1
146 68.86 precipitation 0.1 30 < th dose independent rect. 3 23
147 68.86 precipitation 0.1 30 < th dose dependent rect. 3 23
184 69.17 atmosphere 1000.0 270 < th dose independent rect. 16 3
185 69.22 atmosphere 1005.0 10 < th dose independent rect. 20 1
187 69.23 atmosphere 1000.0 270 < th dose dependent rect. 16 1
193 69.43 atmosphere 1000.0 270 < th dose dependent rect. 16 3
197 69.54 wind 9.0 30 < th dose independent rect. 3 23
209 70.07 precipitation 0.1 270 > th dose dependent rect. 16 3
213 70.09 precipitation 0.1 270 > th dose independent rect. 16 1
223 70.21 precipitation 0.1 270 > th dose independent rect. 16 3
241 70.46 temperature 20.0 10 < th dose independent rect. 11 9
247 70.48 temperature 20.0 10 < th dose independent rect. 16 4
255 70.49 temperature 20.0 10 < th dose independent rect. 19 1
273 70.73 atmosphere 1005.0 10 > th dose dependent rect. 2 3
291 70.94 humidity 50.0 30 > th dose independent rect. 3 23
373 71.82 atmosphere 1005.0 90 < th dose dependent rect. 18 1
422 72.29 wind 3.0 30 < th dose dependent rect. 2 3
431 72.38 temperature 30.0 30 < th dose independent rect. 3 23
433 72.41 precipitation 0.1 270 > th dose dependent sin 20 NA
445 72.54 atmosphere 1000.0 30 > th dose independent rect. 5 21
471 72.74 wind 5.0 10 < th dose independent rect. 2 3
487 72.81 radiation 40.0 10 < th dose dependent rect. 15 11
508 72.91 atmosphere 1015.0 30 < th dose independent rect. 3 23
511 72.92 radiation 10.0 10 < th dose independent rect. 14 12
523 72.96 precipitation 0.1 10 < th dose independent rect. 2 3
525 72.96 precipitation 0.1 10 < th dose dependent rect. 2 3
530 72.98 wind 1.0 10 > th dose independent rect. 5 23
538 73.01 precipitation 0.1 30 < th dose independent rect. 5 21
539 73.01 precipitation 0.1 30 < th dose dependent rect. 5 21
540 73.02 radiation 1.0 30 < th dose dependent rect. 2 3
542 73.03 temperature 10.0 30 > th dose independent rect. 2 3
544 73.03 temperature 30.0 30 < th dose independent rect. 2 3
545 73.03 humidity 50.0 30 > th dose independent rect. 2 3
549 73.03 atmosphere 995.0 30 > th dose independent rect. 2 3
550 73.03 atmosphere 1010.0 30 < th dose independent rect. 2 3
552 73.03 radiation 1.0 30 < th dose independent rect. 2 3
557 73.03 temperature 10.0 30 > th dose independent rect. 5 21
594 73.06 humidity 90.0 90 < th dose independent rect. 2 1
595 73.06 atmosphere 1000.0 10 > th dose independent rect. 16 10
596 73.06 precipitation 0.1 270 > th dose dependent rect. 1 17
602 73.08 precipitation 0.1 270 > th dose dependent rect. 16 10
613 73.10 wind 9.0 30 < th dose independent rect. 5 21
617 73.12 atmosphere 1010.0 10 < th dose dependent rect. 20 1
635 73.20 wind 9.0 10 < th dose independent rect. 16 10
638 73.20 humidity 50.0 10 > th dose dependent rect. 2 3
643 73.21 wind 1.0 10 > th dose independent rect. 5 21
646 73.22 wind 1.0 10 < th dose independent rect. 9 18
657 73.24 precipitation 0.1 270 > th dose dependent rect. 10 16
659 73.25 precipitation 0.1 10 < th dose independent rect. 2 14
662 73.25 precipitation 0.1 10 < th dose dependent rect. 2 14
674 73.28 wind 9.0 1440 < th dose independent rect. 3 3
675 73.28 temperature 10.0 1440 > th dose independent rect. 3 3
678 73.28 temperature 30.0 1440 < th dose independent rect. 3 3
682 73.28 humidity 50.0 1440 > th dose independent rect. 3 3
692 73.28 atmosphere 995.0 1440 > th dose independent rect. 3 3
693 73.28 radiation 20.0 1440 < th dose independent rect. 3 3
703 73.28 atmosphere 995.0 90 > th dose independent rect. 15 10
705 73.28 temperature 10.0 1440 > th dose independent rect. 6 21
713 73.29 precipitation 0.1 10 < th dose independent rect. 16 10
718 73.29 precipitation 0.1 10 < th dose dependent rect. 16 10
725 73.31 temperature 10.0 10 > th dose independent rect. 16 10
726 73.31 radiation 40.0 10 < th dose independent rect. 16 10
727 73.31 temperature 10.0 10 > th dose independent rect. 2 14
729 73.31 atmosphere 1015.0 10 < th dose independent rect. 2 14
737 73.33 radiation 30.0 10 < th dose independent rect. 14 12
741 73.34 precipitation 0.1 90 < th dose independent rect. 1 14
744 73.34 precipitation 0.1 90 < th dose dependent rect. 1 14
746 73.35 radiation 40.0 90 < th dose independent rect. 15 10
751 73.36 temperature 25.0 1440 < th dose independent rect. 1 1
757 73.36 atmosphere 995.0 10 > th dose independent rect. 2 14
758 73.36 humidity 50.0 30 > th dose independent rect. 5 21
765 73.37 temperature 25.0 90 < th dose dependent rect. 18 1
769 73.38 radiation 1.0 10 < th dose dependent rect. 2 12
782 73.39 humidity 50.0 90 > th dose independent rect. 1 14
786 73.40 wind 9.0 90 < th dose independent rect. 15 10
787 73.40 temperature 10.0 90 > th dose independent rect. 15 10
788 73.40 humidity 50.0 10 > th dose independent rect. 16 10
789 73.40 temperature 10.0 90 > th dose independent rect. 1 14
790 73.40 atmosphere 1015.0 90 < th dose independent rect. 1 14
795 73.41 wind 9.0 10 < th dose independent rect. 2 14
828 73.44 atmosphere 995.0 90 > th dose independent rect. 1 14
847 73.46 wind 1.0 10 > th dose independent rect. 15 23
848 73.47 precipitation 0.1 90 < th dose independent rect. 15 10
854 73.47 precipitation 0.1 90 < th dose dependent rect. 15 10
870 73.50 atmosphere 995.0 30 > th dose dependent rect. 15 11
874 73.51 wind 9.0 90 < th dose independent rect. 1 14
888 73.54 atmosphere 995.0 30 > th dose dependent rect. 3 23
891 73.55 radiation 1.0 10 < th dose independent rect. 2 12
906 73.56 wind 1.0 30 > th dose independent rect. 3 23
940 73.60 wind 1.0 90 > th dose independent rect. 15 10
986 73.63 temperature 25.0 10 < th dose dependent rect. 20 1