BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0122200 Os01g0122200|AK107171
(337 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62800.1 | chr5:25218663-25219967 FORWARD LENGTH=349 67 2e-11
AT5G37910.1 | chr5:15096210-15097318 REVERSE LENGTH=277 65 3e-11
AT5G37930.1 | chr5:15102239-15103651 REVERSE LENGTH=350 65 6e-11
AT1G66660.2 | chr1:24862056-24863332 REVERSE LENGTH=349 64 8e-11
AT1G66630.1 | chr1:24855479-24856714 REVERSE LENGTH=304 62 3e-10
AT1G66650.1 | chr1:24860113-24861821 REVERSE LENGTH=330 61 8e-10
AT5G37890.1 | chr5:15090512-15091822 REVERSE LENGTH=287 59 3e-09
AT5G37870.1 | chr5:15073764-15074851 REVERSE LENGTH=282 55 7e-08
AT1G66620.1 | chr1:24852806-24854044 REVERSE LENGTH=314 54 1e-07
AT3G61790.1 | chr3:22871974-22873543 REVERSE LENGTH=327 48 7e-06
>AT5G62800.1 | chr5:25218663-25219967 FORWARD LENGTH=349
Length = 348
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 73 IDLAVLHXXXXXXXXXXXTYQCAAGHLACSSCHGDV----PGKKCHTCXXXXXXXVYARC 128
+DL VL T+QC GH+ C+ C V PG C RC
Sbjct: 36 LDLDVLDCPVCFEPLTIPTFQCDDGHIVCNFCFAKVSNKCPGPGCDLPIGN------KRC 89
Query: 129 PGLDTFLRAAKILCPNDLFGCRSYVAYHDVAAHQRACPHAPCSCSEPRCDFLGSPPMLLA 188
++ L +A + C N FGC V+Y V++H++ C ++ CSC C++ GS ++
Sbjct: 90 FAMERVLESAFVPCQNTEFGCTKSVSYEKVSSHEKECNYSQCSCPNLECNYTGSYNIIYG 149
Query: 189 HLVADHSW 196
H + H +
Sbjct: 150 HFMRRHLY 157
>AT5G37910.1 | chr5:15096210-15097318 REVERSE LENGTH=277
Length = 276
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 69/165 (41%), Gaps = 13/165 (7%)
Query: 61 GDGFEGVEISVR-----IDLAVLHXXXXXXXXXXXTYQCAAGHLACSSCHGDVPGKKCHT 115
GDG E V R +DL +L +QC GHLAC SC + KC
Sbjct: 14 GDGGERVAKRQRSAIVLLDLDILDCPICCEALTSPIFQCDNGHLACGSCCPKL-SNKCPA 72
Query: 116 CXXXXXXXVYARCPGLDTFLRAAKILCPNDLFGCRSYVAYHDVAAHQRACPHAPCSCSEP 175
C ++R +++ L + I CPN FGC Y +AH++ C + CSC
Sbjct: 73 CTLPVG---HSRSRAMESVLESILIPCPNVRFGCTKSFFYGKESAHEKECIFSQCSCPSS 129
Query: 176 RCDFLGSPPMLLAHLVADHS----WPVSKVPYGEVLTIHVPESER 216
CD+ GS L AH HS W + + T + S++
Sbjct: 130 VCDYTGSYKDLYAHYKLTHSTNIFWNIKRFRCANFFTTSMLISDK 174
>AT5G37930.1 | chr5:15102239-15103651 REVERSE LENGTH=350
Length = 349
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 92 YQCAAGHLACSSCHGDVPGKKCHTCXXXXXXXVYARCPGLDTFLRAAKILCPNDLFGCRS 151
+QC GHLAC+ C V + C +C Y RC ++ + A+++ C N +GC+
Sbjct: 125 FQCDNGHLACTLCCTKVRNR-CPSCTLPIG---YVRCRAMEKVIEASRVSCLNAKYGCKE 180
Query: 152 YVAYHDVAAHQRACPHAPCSCSEPRCDFLGSPPMLLAHLVADHSWPVSKVPYGEVLTIHV 211
+Y + +H++ C PCSC C + G L H+ A+H + + LTI +
Sbjct: 181 STSYGNRFSHEQVCVFTPCSCPILDCHYTGYYKDLNNHVRAEHKDDLISFVWNTRLTISL 240
Query: 212 PESERRHLVVAGAAG 226
+++ ++ G
Sbjct: 241 DLNKKTTILQEENDG 255
>AT1G66660.2 | chr1:24862056-24863332 REVERSE LENGTH=349
Length = 348
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 92 YQCAAGHLACSSCHGDVPGKKCHTCXXXXXXXVYARCPGLDTFLRAAKILCPNDLFGCRS 151
YQC+ GHLACSSC + KKC C RC ++ + A+ + CPN GC+
Sbjct: 118 YQCSNGHLACSSCCQKL-NKKCSFCRCNIGD---IRCRAMEKVIEASIVPCPNAKHGCKE 173
Query: 152 YVAYHDVAAHQRACPHAPCSCSEPRCDFLGSPPMLLAHLVAD-HSW 196
Y + ++H++ C CSC C+++ S L +H + H W
Sbjct: 174 TTTYCNQSSHEKVCKFVRCSCPVSNCNYVSSYSNLKSHACSTAHVW 219
>AT1G66630.1 | chr1:24855479-24856714 REVERSE LENGTH=304
Length = 303
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 92 YQCAAGHLACSSCHGDVPGKKCHTCXXXXXXXVYARCPGLDTFLRAAKILCPNDLFGCRS 151
YQC GH+ACSSC V K C + R L+ + A + CPN +GC
Sbjct: 61 YQCDNGHIACSSCCKKVKYK----CPYCSLRIGFFRSRILEKIVEAVVVSCPNAKYGCTE 116
Query: 152 YVAYHDVA--AHQRACPHAPCSCSEPRCDFLGSPPMLLAHLVA----DHSW 196
+ Y + + AH+R C C C EP C + G L H A DHSW
Sbjct: 117 KIPYDNESESAHERVCEFTLCYCPEPECKYTGVYTDLYRHYHAEHKTDHSW 167
>AT1G66650.1 | chr1:24860113-24861821 REVERSE LENGTH=330
Length = 329
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 92 YQCAAGHLACSSCHGDVPGKKCHTCXXXXXXXVYARCPGLDTFLRAAKILCPNDLFGCRS 151
+QC GHLAC C + K+C C RC ++ ++A + C N ++GC+
Sbjct: 98 FQCNNGHLACFLCCIKL-KKRCSFCKLPIGD---VRCRAMEKVIKAGLVSCSNAIYGCKQ 153
Query: 152 YVAY-HDVAAHQRACPHAPCSCSEPRCDFLGSPPMLLAHLVADH 194
Y + + +H++ C APCSC C+++G L+ H A H
Sbjct: 154 STTYGNQLQSHEKVCVFAPCSCPIKDCNYIGFYKDLINHFRATH 197
>AT5G37890.1 | chr5:15090512-15091822 REVERSE LENGTH=287
Length = 286
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 70 SVRIDLAVLHXXXXXXXXXXXTYQCAAGHLACSSCHGDVPGKKCHTCXXXXXXXVYARCP 129
++ +DL +L +QC GHLACSSC + KC C + RC
Sbjct: 41 TMLMDLEILDCPICYEAFTIPIFQCDNGHLACSSCCPKL-NNKCPACTSPVG---HNRCR 96
Query: 130 GLDTFLRAAKILCPNDLFGCRSYVAYHDVAAHQRACPHAPCSCSEPRCDFLGSPPMLLAH 189
+++ L + I CPN GC+ V+Y H++ C + C+C C++ S L H
Sbjct: 97 AMESVLESILIPCPNAKLGCKKNVSYGKELTHEKECMFSHCACPALDCNYTSSYKDLYTH 156
Query: 190 LVADH 194
H
Sbjct: 157 YRITH 161
>AT5G37870.1 | chr5:15073764-15074851 REVERSE LENGTH=282
Length = 281
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 74 DLAVLHXXXXXXXXXXXTYQCAAGHLACSSCHGDVPGKKCHTCXXXXXXXVYARCPGLDT 133
DL +L +QC GHLACSSC + K C + RC ++
Sbjct: 39 DLDILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNK----CPACALPVGHIRCRAMER 94
Query: 134 FLRAAKILCPNDLFGCRSYVAYHDVAAHQRACPHAPCSCSEPRCDFLGSPPMLLAHLVAD 193
L + + C GC + Y + H++ C +PCSC C++ GS L H
Sbjct: 95 VLESVLVPCRYADLGCTKTIYYGRESTHEKICNFSPCSCPVQGCNYTGSYKDLYEHYDLT 154
Query: 194 HS 195
HS
Sbjct: 155 HS 156
>AT1G66620.1 | chr1:24852806-24854044 REVERSE LENGTH=314
Length = 313
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 92 YQCAAGHLACSSCHGDVPGKKCHTCXXXXXXXVYARCPGLDTFLRAAKILCPNDLFGCRS 151
+QC GH+ACSSC + K C +C R ++ + A + CPN GC
Sbjct: 56 FQCDNGHIACSSCCTKLRNK-CPSCALPIGNF---RSRIMERVVEAVMVTCPNVKHGCTE 111
Query: 152 YVAYHDVAAHQRACPHAPCSCSEPRCDFLGSPPMLLAHLVADH--SW 196
+Y H++ C A C C P C++ G L +H +H +W
Sbjct: 112 KFSYGKELIHEKDCRFALCYCPAPNCNYSGVYKDLYSHFYVNHYDTW 158
>AT3G61790.1 | chr3:22871974-22873543 REVERSE LENGTH=327
Length = 326
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 92 YQCAAGHLACSSCHGDVPGKKCHTCXXXXXXXVYARCPGLDTFLRAAKILCPNDLFGCRS 151
+QC GH CS+C V +C TC RC L+ + ++ C + GC
Sbjct: 75 HQCHNGHTLCSTCKARV-HNRCPTCRQELGD---IRCLALEKVAESLELPCKHMSLGCPE 130
Query: 152 YVAYHDVAAHQRACPHAPCSC--SEPRCDFLGSPPMLLAHLVADH 194
Y+ H+ C P SC + C G P L+AHL DH
Sbjct: 131 IFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDH 175
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,632,049
Number of extensions: 179176
Number of successful extensions: 352
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 13
Length of query: 337
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 238
Effective length of database: 8,392,385
Effective search space: 1997387630
Effective search space used: 1997387630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)