Os01g0122300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os01g0122300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.93 | 0.585 | 3.23 | -0.753 | 0.178 | 0.17 | 0.334 | 2 | -0.0509 | 7.81 | 998.9 | 12224 | -- | -- |
| 156.14 | 0.582 | 3.25 | -0.838 | 0.171 | 0.576 | 0.418 | -- | -0.0245 | 7.98 | 999 | 11675 | -- | -- |
| 155.23 | 0.58 | 3.23 | -0.74 | 0.178 | 0.151 | -- | 2.07 | -0.0534 | 8.18 | 998.9 | 12190 | -- | -- |
| 156.41 | 0.582 | 3.25 | -0.852 | 0.173 | 0.58 | -- | -- | -0.0321 | 8.15 | 998.9 | 11672 | -- | -- |
| 156.96 | 0.583 | 3.23 | -0.739 | -- | 0.164 | -- | 2.02 | -0.0496 | -- | 998.9 | 12109 | -- | -- |
| 164.12 | 0.601 | 3.26 | -0.736 | 0.174 | -- | 0.311 | -- | -0.0882 | 7.98 | -- | -- | -- | -- |
| 164.39 | 0.6 | 3.26 | -0.727 | 0.173 | -- | -- | -- | -0.088 | 8.35 | -- | -- | -- | -- |
| 158.07 | 0.586 | 3.26 | -0.847 | -- | 0.581 | -- | -- | -0.0333 | -- | 998.9 | 11666 | -- | -- |
| 174.35 | 0.615 | 3.24 | -- | 0.167 | 0.439 | -- | -- | 0.037 | 8.55 | 999 | 10398 | -- | -- |
| 166.06 | 0.602 | 3.27 | -0.726 | -- | -- | -- | -- | -0.0862 | -- | -- | -- | -- | -- |
| 178.31 | 0.625 | 3.25 | -- | 0.17 | -- | -- | -- | -0.0071 | 8.67 | -- | -- | -- | -- |
| 175.97 | 0.618 | 3.24 | -- | -- | 0.437 | -- | -- | 0.0389 | -- | 998.9 | 10311 | -- | -- |
| 179.95 | 0.626 | 3.25 | -- | -- | -- | -- | -- | -0.00571 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.14 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 2 | 154.72 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 3 | 154.72 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 4 | 154.74 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 8 | 154.88 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 12 | 155.15 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 13 | 155.17 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 14 | 155.17 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 18 | 155.40 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 20 | 155.46 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 15 | 19 |
| 21 | 155.47 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 23 | 155.48 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 40 | 155.50 | temperature | 25.0 | 10 | > th | dose independent | rect. | 6 | 18 |
| 41 | 155.51 | temperature | 25.0 | 10 | > th | dose independent | rect. | 6 | 15 |
| 44 | 155.55 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 47 | 155.58 | radiation | 10.0 | 720 | < th | dose independent | rect. | 19 | 12 |
| 54 | 155.70 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 70 | 155.71 | radiation | 10.0 | 720 | < th | dose independent | rect. | 2 | 5 |
| 79 | 155.84 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 88 | 155.85 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 118 | 155.90 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 124 | 155.95 | radiation | 40.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 128 | 155.97 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 129 | 155.98 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 141 | 156.01 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 163 | 156.02 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 165 | 156.02 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 174 | 156.02 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 211 | 156.07 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 212 | 156.07 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 213 | 156.07 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 230 | 156.08 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 249 | 156.10 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 263 | 156.12 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 274 | 156.12 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 12 | 10 |
| 292 | 156.13 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 310 | 156.13 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 13 | 8 |
| 377 | 156.16 | atmosphere | 1000.0 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 456 | 156.18 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 466 | 156.18 | atmosphere | 1000.0 | 14400 | < th | dose dependent | sin | 15 | NA |
| 479 | 156.19 | atmosphere | 1000.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 583 | 156.22 | radiation | 40.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 591 | 156.22 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 628 | 156.23 | atmosphere | 1000.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 631 | 156.23 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 703 | 156.25 | wind | 9.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 797 | 156.27 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 5 | 8 |