BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0120900 Os01g0120900|AK110709
         (201 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0120900  Conserved hypothetical protein                      295   2e-80
Os11g0536000  Conserved hypothetical protein                       67   9e-12

>Os01g0120900 Conserved hypothetical protein
          Length = 201

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/201 (75%), Positives = 152/201 (75%)

Query: 1   MGITPSCIPLAPVAGGSSSTACKIIHVDGTVTRLARPVRASELMVDYPGQFVCDSGRLAV 60
           MGITPSCIPLAPVAGGSSSTACKIIHVDGTVTRLARPVRASELMVDYPGQFVCDSGRLAV
Sbjct: 1   MGITPSCIPLAPVAGGSSSTACKIIHVDGTVTRLARPVRASELMVDYPGQFVCDSGRLAV 60

Query: 61  GCRVPGVAADELLEPRRAYFLLPMDMLYSVLTDEEMXXXXXXXXXXXXXXXWKRIATXXX 120
           GCRVPGVAADELLEPRRAYFLLPMDMLYSVLTDEEM               WKRIAT   
Sbjct: 61  GCRVPGVAADELLEPRRAYFLLPMDMLYSVLTDEEMAALSSFHAATAASSSWKRIATGGG 120

Query: 121 XXXXXXXXXXISEPTDHEGDDGSDDGARFFPVLSLQLHXXXXXXXXXXXXXXXXXXXXXV 180
                     ISEPTDHEGDDGSDDGARFFPVLSLQLH                     V
Sbjct: 121 RRRDGSHGGRISEPTDHEGDDGSDDGARFFPVLSLQLHAAPDAAAAAAAGVKPSGGGGGV 180

Query: 181 RRHRSWHPRLEAIDEVPCTGG 201
           RRHRSWHPRLEAIDEVPCTGG
Sbjct: 181 RRHRSWHPRLEAIDEVPCTGG 201



>Os11g0536000 Conserved hypothetical protein
          Length = 280

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 45/74 (60%)

Query: 19  STACKIIHVDGTVTRLARPVRASELMVDYPGQFVCDSGRLAVGCRVPGVAADELLEPRRA 78
           + A +++  DG V    RPV A ELM  +P   VC S  L +G ++P VA  E+LEP  A
Sbjct: 46  AAAVRLVGSDGKVRTYRRPVTARELMQQHPRHLVCRSDALLIGEKIPAVAPGEVLEPGHA 105

Query: 79  YFLLPMDMLYSVLT 92
           YFLLP  + +SVL+
Sbjct: 106 YFLLPAHLFHSVLS 119



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,064,025
Number of extensions: 185999
Number of successful extensions: 406
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 2
Length of query: 201
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 105
Effective length of database: 12,023,257
Effective search space: 1262441985
Effective search space used: 1262441985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)