BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0116100 Os01g0116100|J080093F08
         (91 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0116100  Conserved hypothetical protein                      189   5e-49
Os01g0114200  Conserved hypothetical protein                      166   2e-42

>Os01g0116100 Conserved hypothetical protein
          Length = 91

 Score =  189 bits (479), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MVSCPEHDNCIPGAPHDGGCVESRNGYLISGPCLLHRCDEQVLKKSSSSLAVATSDLYFR 60
          MVSCPEHDNCIPGAPHDGGCVESRNGYLISGPCLLHRCDEQVLKKSSSSLAVATSDLYFR
Sbjct: 1  MVSCPEHDNCIPGAPHDGGCVESRNGYLISGPCLLHRCDEQVLKKSSSSLAVATSDLYFR 60

Query: 61 GASRRSTVIRRLVKSMQCNGDEMEVNEKAVL 91
          GASRRSTVIRRLVKSMQCNGDEMEVNEKAVL
Sbjct: 61 GASRRSTVIRRLVKSMQCNGDEMEVNEKAVL 91



>Os01g0114200 Conserved hypothetical protein
          Length = 92

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/92 (90%), Positives = 85/92 (92%), Gaps = 1/92 (1%)

Query: 1  MVSCPEHDNCIPGAPHDGGCVESRNGYLISGPCLLHRCDEQVLKKSSSSLAVATSDLYFR 60
          MVSCPEHDNCIPGAPHDGGCVE RNGYLISGPCLLHR DEQVLKKSSSSLAVATSD Y R
Sbjct: 1  MVSCPEHDNCIPGAPHDGGCVERRNGYLISGPCLLHRWDEQVLKKSSSSLAVATSDSYLR 60

Query: 61 GASRRSTVIRRLVKSMQCNGDEMEV-NEKAVL 91
          G SRRSTVIRRLVKSMQ NGDEMEV +E+AVL
Sbjct: 61 GESRRSTVIRRLVKSMQFNGDEMEVDDERAVL 92



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,284,083
Number of extensions: 109933
Number of successful extensions: 205
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 2
Length of query: 91
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 30
Effective length of database: 13,850,747
Effective search space: 415522410
Effective search space used: 415522410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)