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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0116100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.65 (0.0373) R2 : 0.304
β1 : -1.6 (0.137) R2dD : 0.217 R2D : 0.21
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.649 (0.0836) R2dE : 0.0922 R2E : 0.0787
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0736 (0.0797) R2dN8 : 0.00175 R2N8 : 0.00802
σ : 0.699
deviance : 225.04
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 21.62
memory length : 10
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
220.4 0.698 4.65 -1.62 0.25 -0.72 -0.81 -0.0661 0.061 4.53 21.74 11 -- --
220.34 0.691 4.65 -1.62 0.25 -0.727 -0.827 -- 0.063 4.4 21.63 10 -- --
221.92 0.694 4.64 -1.62 0.243 -0.719 -- -0.252 0.0679 4.4 21.61 10 -- --
222.22 0.694 4.65 -1.62 0.246 -0.725 -- -- 0.066 4.42 21.6 10 -- --
224.73 0.698 4.65 -1.61 -- -0.642 -- -0.261 0.0727 -- 21.62 10 -- --
241.65 0.729 4.63 -1.56 0.45 -- 0.408 -- 0.0851 10.8 -- -- -- --
242.29 0.729 4.63 -1.54 0.451 -- -- -- 0.0855 10.5 -- -- -- --
225.04 0.699 4.65 -1.6 -- -0.649 -- -- 0.0736 -- 21.62 10 -- --
287.26 0.789 4.63 -- 0.212 -0.661 -- -- 0.224 4.35 19.98 13 -- --
254.79 0.746 4.65 -1.55 -- -- -- -- 0.0835 -- -- -- -- --
304.79 0.817 4.6 -- 0.462 -- -- -- 0.257 10.8 -- -- -- --
289.09 0.792 4.6 -- -- -0.616 -- -- 0.267 -- 19.97 13 -- --
317.99 0.832 4.61 -- -- -- -- -- 0.255 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 209.06 humidity 90.0 14400 > th dose independent rect. 7 1
2 211.20 humidity 90.0 14400 > th dose dependent rect. 7 1
4 211.57 wind 3.0 1440 < th dose independent rect. 8 2
6 211.91 humidity 90.0 14400 < th dose independent rect. 7 1
7 211.92 wind 3.0 1440 > th dose independent rect. 8 2
11 212.75 wind 9.0 14400 < th dose independent rect. 5 6
12 212.81 precipitation 0.1 4320 < th dose independent rect. 5 2
13 212.81 precipitation 0.1 4320 < th dose dependent rect. 5 2
20 213.12 atmosphere 1005.0 43200 > th dose independent rect. 3 1
21 213.13 precipitation 0.1 4320 > th dose dependent rect. 5 2
22 213.18 precipitation 0.1 4320 > th dose independent rect. 5 2
23 213.23 atmosphere 1005.0 43200 < th dose independent rect. 1 1
24 213.32 humidity 90.0 14400 > th dose independent rect. 6 8
25 213.35 wind 5.0 1440 < th dose dependent rect. 8 2
28 213.36 humidity 80.0 1440 > th dose independent rect. 1 12
31 213.53 humidity 80.0 1440 < th dose independent rect. 2 11
32 213.55 atmosphere 1005.0 43200 < th dose independent rect. 23 1
33 213.59 atmosphere 1005.0 43200 < th dose independent rect. 22 6
36 213.68 atmosphere 1005.0 43200 > th dose independent rect. 1 1
37 213.73 humidity 90.0 14400 > th dose independent rect. 16 1
39 213.76 precipitation 0.1 1440 < th dose independent rect. 5 5
40 213.76 precipitation 0.1 1440 < th dose dependent rect. 5 5
45 213.88 atmosphere 1005.0 43200 > th dose independent rect. 1 3
46 213.90 atmosphere 1005.0 43200 < th dose independent rect. 3 1
48 213.91 humidity 80.0 1440 < th dose independent rect. 4 9
50 213.93 atmosphere 1005.0 43200 < th dose independent rect. 1 3
55 213.98 humidity 90.0 14400 > th dose independent rect. 6 11
58 214.01 humidity 80.0 1440 > th dose dependent rect. 3 9
80 214.23 humidity 60.0 1440 > th dose dependent rect. 24 13
81 214.24 humidity 80.0 14400 > th dose dependent rect. 8 8
107 214.45 humidity 80.0 1440 > th dose dependent rect. 5 4
142 214.71 atmosphere 1005.0 43200 < th dose independent rect. 11 1
143 214.71 humidity 80.0 1440 < th dose independent rect. 21 16
164 214.87 humidity 90.0 14400 > th dose dependent rect. 6 14
171 214.91 humidity 90.0 14400 > th dose dependent rect. 6 12
180 214.96 atmosphere 1005.0 43200 > th dose independent rect. 11 1
186 214.98 humidity 80.0 1440 < th dose independent sin 6 NA
197 215.04 temperature 20.0 270 > th dose dependent rect. 1 6
201 215.05 wind 1.0 1440 > th dose dependent rect. 8 2
222 215.17 humidity 90.0 14400 > th dose dependent rect. 16 1
226 215.18 humidity 90.0 14400 > th dose independent rect. 3 15
234 215.21 humidity 80.0 1440 > th dose independent sin 6 NA
241 215.24 humidity 90.0 14400 > th dose independent rect. 3 18
282 215.42 humidity 90.0 1440 > th dose independent rect. 7 1
294 215.50 humidity 90.0 14400 > th dose independent sin 1 NA
313 215.59 wind 1.0 14400 > th dose dependent rect. 1 3
325 215.62 humidity 60.0 1440 > th dose dependent sin 6 NA
351 215.72 wind 3.0 14400 > th dose independent rect. 1 3
354 215.73 humidity 90.0 1440 < th dose independent rect. 5 4
355 215.74 precipitation 0.1 1440 > th dose dependent rect. 5 6
366 215.79 wind 3.0 14400 < th dose independent rect. 1 3
372 215.81 wind 9.0 14400 > th dose independent rect. 5 6
404 215.94 humidity 90.0 14400 > th dose dependent sin 0 NA
409 215.98 humidity 90.0 1440 < th dose independent rect. 7 1
444 216.13 humidity 80.0 1440 > th dose independent rect. 21 16
485 216.37 precipitation 0.1 1440 > th dose independent rect. 5 6
488 216.37 wind 9.0 14400 < th dose dependent rect. 1 3
550 216.64 humidity 90.0 1440 > th dose independent rect. 5 4
560 216.69 humidity 70.0 1440 < th dose independent rect. 9 4
591 216.80 humidity 90.0 1440 < th dose dependent sin 7 NA
606 216.87 humidity 80.0 14400 > th dose independent rect. 9 3
612 216.90 humidity 80.0 14400 > th dose independent rect. 9 5
642 217.00 precipitation 0.1 14400 > th dose dependent rect. 17 1
711 217.22 humidity 90.0 1440 < th dose dependent rect. 23 14
746 217.30 humidity 90.0 1440 < th dose dependent rect. 21 16
758 217.33 radiation 1.0 4320 > th dose independent rect. 6 3
765 217.36 humidity 70.0 1440 > th dose independent rect. 9 4
767 217.37 wind 3.0 14400 < th dose independent rect. 24 7
775 217.39 humidity 80.0 14400 < th dose independent rect. 10 1
821 217.51 wind 9.0 14400 < th dose independent rect. 23 12
825 217.51 humidity 90.0 1440 < th dose dependent rect. 23 12
837 217.54 radiation 1.0 4320 < th dose independent rect. 6 3
869 217.65 humidity 90.0 14400 > th dose dependent rect. 19 1
887 217.70 radiation 20.0 10 < th dose independent rect. 11 22
903 217.75 humidity 90.0 14400 < th dose independent sin 1 NA
927 217.81 precipitation 0.1 14400 > th dose independent rect. 17 1
982 217.92 humidity 90.0 14400 < th dose independent rect. 16 1