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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0114200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.0327) R2 : 0.546
β1 : -2.53 (0.121) R2dD : 0.463 R2D : 0.35
β2 : 1.18 (0.128) R2dC : 0.228 R2C : -0.279
β3 : 2.02 (0.158) R2dE : 0.446 R2E : -0.15
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.473 (0.0712) R2dN8 : 0.0614 R2N8 : -0.0413
σ : 0.611
deviance : 172.35
__
_____
C
peak time of C : 10.7
E
wheather : temperature
threshold : 14.4
memory length : 66
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.9
open length of G : 10.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.3 0.606 4.21 -2.65 1.11 1.98 -1.92 -2.34 -0.526 10.8 14.4 55 18 10.7
169.3 0.606 4.2 -2.53 1.15 1.97 -0.912 -- -0.489 10.7 13.97 60 17.9 10.7
172.33 0.611 4.2 -2.53 1.15 1.99 -- 0.319 -0.467 10.7 14.5 65 17.9 10.7
172.35 0.611 4.19 -2.53 1.18 2.02 -- -- -0.473 10.7 14.4 66 17.9 10.7
195.88 0.652 4.21 -2.34 -- 1.13 -- 0.762 -0.435 -- 19.68 39 18.4 10.6
227.03 0.706 4.18 -2.3 0.191 -- 1.17 -- -0.293 0.45 -- -- -- --
231.81 0.713 4.18 -2.35 0.238 -- -- -- -0.301 2.91 -- -- -- --
195 0.65 4.22 -2.46 -- 1.22 -- -- -0.46 -- 19.91 20 18.5 10.5
340.5 0.859 4.18 -- 1.15 1.9 -- -- -0.261 10.7 13.43 61 18 10.7
235.09 0.716 4.18 -2.34 -- -- -- -- -0.295 -- -- -- -- --
377.66 0.909 4.12 -- 0.192 -- -- -- -0.0395 2.83 -- -- -- --
352.89 0.875 4.15 -- -- 0.981 -- -- -0.165 -- 19.8 17 18.6 10.4
379.8 0.91 4.12 -- -- -- -- -- -0.0354 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.39 temperature 15.0 30 > th dose dependent rect. 18 11
5 173.62 temperature 30.0 270 < th dose dependent rect. 13 17
7 174.35 temperature 15.0 270 > th dose dependent rect. 17 10
17 176.94 temperature 25.0 720 > th dose independent rect. 17 2
26 178.92 temperature 30.0 10 < th dose dependent rect. 14 18
54 180.31 temperature 15.0 720 > th dose dependent rect. 16 3
70 181.38 temperature 25.0 270 < th dose independent rect. 12 18
110 184.31 temperature 20.0 30 > th dose independent rect. 18 11
144 186.07 radiation 1.0 720 > th dose independent rect. 17 1
152 186.28 temperature 25.0 720 < th dose independent rect. 13 9
155 186.40 temperature 30.0 720 < th dose dependent rect. 12 10
233 188.35 temperature 20.0 10 > th dose dependent rect. 20 9
249 188.57 temperature 25.0 720 > th dose independent sin 18 NA
255 188.63 temperature 20.0 90 > th dose dependent rect. 20 8
420 190.59 atmosphere 1010.0 30 < th dose independent rect. 18 11
435 190.73 temperature 25.0 720 > th dose independent rect. 11 13
454 190.91 temperature 25.0 720 < th dose independent sin 19 NA
469 191.08 temperature 20.0 270 > th dose dependent sin 12 NA
498 191.27 temperature 30.0 270 < th dose dependent sin 13 NA
499 191.28 radiation 1.0 720 < th dose dependent rect. 11 13
532 191.60 temperature 30.0 720 < th dose dependent rect. 19 2
537 191.65 wind 7.0 30 < th dose independent rect. 18 11
551 191.79 radiation 1.0 720 < th dose dependent rect. 15 9
555 191.85 temperature 25.0 720 > th dose dependent sin 14 NA
575 192.02 precipitation 0.1 30 < th dose independent rect. 18 11
577 192.02 precipitation 0.1 30 < th dose dependent rect. 18 11
601 192.29 radiation 1.0 720 < th dose independent rect. 15 9
610 192.39 radiation 1.0 720 < th dose independent rect. 13 11
611 192.39 radiation 1.0 720 < th dose independent rect. 11 13
699 193.17 radiation 10.0 30 < th dose dependent rect. 18 11
708 193.22 temperature 20.0 720 > th dose dependent sin 17 NA
714 193.25 atmosphere 995.0 30 > th dose independent rect. 18 11
719 193.27 humidity 50.0 30 > th dose independent rect. 18 11
720 193.27 radiation 20.0 30 < th dose independent rect. 18 11
723 193.27 temperature 10.0 30 > th dose independent rect. 5 13
725 193.27 atmosphere 1015.0 30 < th dose independent rect. 5 13
727 193.29 atmosphere 1000.0 30 > th dose independent rect. 5 13
746 193.39 radiation 10.0 10 < th dose dependent rect. 5 13
780 193.64 temperature 30.0 720 < th dose dependent sin 19 NA
781 193.65 precipitation 0.1 30 < th dose independent rect. 5 13
783 193.65 precipitation 0.1 30 < th dose dependent rect. 5 13
862 194.19 wind 9.0 30 < th dose independent rect. 5 13
863 194.19 temperature 10.0 720 > th dose dependent sin 18 NA
888 194.44 humidity 50.0 30 > th dose independent rect. 5 13
891 194.46 temperature 20.0 720 > th dose dependent rect. 11 14
947 195.03 wind 5.0 90 < th dose independent rect. 7 22
964 195.16 radiation 40.0 4320 < th dose dependent rect. 19 10
977 195.29 temperature 25.0 270 < th dose independent sin 14 NA
994 195.41 temperature 10.0 720 > th dose dependent rect. 11 8