BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0111100 Os01g0111100|AK065672
(294 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0111100 Peptidyl-prolyl cis-trans isomerase, cyclophil... 423 e-119
Os08g0292600 Peptidyl-prolyl cis-trans isomerase, cyclophil... 76 3e-14
>Os01g0111100 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 294
Score = 423 bits (1087), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/294 (80%), Positives = 237/294 (80%)
Query: 1 MSHQILHTSNXXXXXXXXXXXXXXXXXXXXKLGRRXXXXXXXXXXXXXXXXXXXXXXXXX 60
MSHQILHTSN KLGRR
Sbjct: 1 MSHQILHTSNPTLPTPPQPHNHHPPVPPPPKLGRRAALAIAAAPAILSATPAPSRAQEAA 60
Query: 61 XXXXXXXXXXXXVTAKAFLDVSIGGEPAGRITIGLFGDAAPAGASRFLSLVTGVGYRRKE 120
VTAKAFLDVSIGGEPAGRITIGLFGDAAPAGASRFLSLVTGVGYRRKE
Sbjct: 61 AAAAAPCIADLPVTAKAFLDVSIGGEPAGRITIGLFGDAAPAGASRFLSLVTGVGYRRKE 120
Query: 121 FVKIVPGYVQHGGVVSYPAIPAVTERLAAEMGAVRAQCGGERSPHAAAGAVSIVVRDPSL 180
FVKIVPGYVQHGGVVSYPAIPAVTERLAAEMGAVRAQCGGERSPHAAAGAVSIVVRDPSL
Sbjct: 121 FVKIVPGYVQHGGVVSYPAIPAVTERLAAEMGAVRAQCGGERSPHAAAGAVSIVVRDPSL 180
Query: 181 PPPKPKLVARGGKLEVDQEQVGVVPNGTEFVITTGDAPELDASALVVGRVVDGMDVLGKI 240
PPPKPKLVARGGKLEVDQEQVGVVPNGTEFVITTGDAPELDASALVVGRVVDGMDVLGKI
Sbjct: 181 PPPKPKLVARGGKLEVDQEQVGVVPNGTEFVITTGDAPELDASALVVGRVVDGMDVLGKI 240
Query: 241 AAVPTVKDNTASPYFRVAKLIGDKRAVVAERGFNRPYTKILITNCGVIEQQQEQ 294
AAVPTVKDNTASPYFRVAKLIGDKRAVVAERGFNRPYTKILITNCGVIEQQQEQ
Sbjct: 241 AAVPTVKDNTASPYFRVAKLIGDKRAVVAERGFNRPYTKILITNCGVIEQQQEQ 294
>Os08g0292600 Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain
containing protein
Length = 327
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 85 GEPAGRITIGLFGDAAPAGASRFLSLVTGVGYRRKEFVKIVPGYVQHGGVVSYPAIPAVT 144
EP GR+ GL+G P + F + T YR K++ G
Sbjct: 122 SEPLGRVIFGLYGRLLPLTTANFKAACTSAAYRGTLVHKLLQGQF--------------- 166
Query: 145 ERLAAEMGAVRAQCGGERSPHAAAGAVSIVVRDPSLPPPKPKLV--ARGGKLEV------ 196
+A G R + GE P +VR+ PK + AR G L +
Sbjct: 167 -FVAGRQGPRRDR--GEVQPPTG------LVRNAETIDPKAFELKHARPGTLSLCLGQND 217
Query: 197 DQEQVGVVPN--GTEFVITTGD--APELDASALVVGRVVDGMDVLGKIAAVPTVKDNTAS 252
D + + + PN EF++TTG PELD +V G V++GM+V+ IA +PT K
Sbjct: 218 DDDDIKLNPNYHNVEFLVTTGPGPCPELDGQNIVFGTVLEGMNVITSIATIPTYKPAERI 277
Query: 253 PYFR-VAKLIGDKRAVVAERGFNRPYTKILITNCGVIE 289
+F A+LIGD+RA A ++RP + I++CG ++
Sbjct: 278 RFFNDFAQLIGDERAQTARALWDRPLKTVYISDCGELK 315
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,770,524
Number of extensions: 398042
Number of successful extensions: 1556
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1559
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 194
Effective length of database: 11,814,401
Effective search space: 2291993794
Effective search space used: 2291993794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)