Os08g0292600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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Os08g0292600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.48 | 0.268 | 11.6 | 0.538 | 0.627 | -0.734 | -0.138 | 2.76 | -0.105 | 20.3 | 9.979 | 4464 | -- | -- |
| 39.48 | 0.295 | 11.7 | -0.246 | 0.722 | -1.19 | 0.0875 | -- | -0.276 | 18.3 | 6.256 | 6841 | -- | -- |
| 32.53 | 0.266 | 11.6 | 0.545 | 0.627 | -0.735 | -- | 2.77 | -0.104 | 20.3 | 9.909 | 4466 | -- | -- |
| 39.5 | 0.295 | 11.7 | -0.249 | 0.721 | -1.18 | -- | -- | -0.277 | 18.4 | 11.99 | 8427 | -- | -- |
| 54.34 | 0.343 | 11.5 | 0.543 | -- | -0.732 | -- | 2.78 | -0.109 | -- | 9.477 | 4410 | -- | -- |
| 52.76 | 0.341 | 11.7 | -0.484 | 0.629 | -- | -0.216 | -- | -0.442 | 20.2 | -- | -- | -- | -- |
| 52.91 | 0.341 | 11.7 | -0.478 | 0.63 | -- | -- | -- | -0.442 | 20.2 | -- | -- | -- | -- |
| 61.82 | 0.366 | 11.6 | -0.038 | -- | -0.87 | -- | -- | -0.217 | -- | 9.273 | 7214 | -- | -- |
| 39.71 | 0.293 | 11.7 | -- | 0.627 | -0.904 | -- | -- | -0.259 | 20.4 | 7.515 | 4427 | -- | -- |
| 74.79 | 0.404 | 11.7 | -0.482 | -- | -- | -- | -- | -0.45 | -- | -- | -- | -- | -- |
| 58.92 | 0.359 | 11.7 | -- | 0.632 | -- | -- | -- | -0.389 | 20.2 | -- | -- | -- | -- |
| 61.63 | 0.366 | 11.6 | -- | -- | -0.902 | -- | -- | -0.265 | -- | 6.809 | 4396 | -- | -- |
| 80.93 | 0.42 | 11.7 | -- | -- | -- | -- | -- | -0.396 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 2 | 30.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 5 | 30.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 12 | 30.37 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 13 | 30.43 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 23 | 30.46 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 29 | 30.59 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 32 | 30.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 52 | 30.78 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 57 | 30.82 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 65 | 30.87 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 66 | 30.87 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 67 | 30.88 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 69 | 30.89 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 71 | 30.90 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 80 | 30.94 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 83 | 30.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 87 | 30.96 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 92 | 30.97 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 93 | 30.97 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 115 | 31.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 117 | 31.04 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 118 | 31.04 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 122 | 31.05 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 127 | 31.06 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 165 | 31.13 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 195 | 31.17 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 208 | 31.19 | humidity | 60 | 43200 | < th | dose independent | sin | 7 | NA |
| 222 | 31.22 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 224 | 31.22 | humidity | 60 | 43200 | < th | dose dependent | sin | 2 | NA |
| 258 | 31.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 263 | 31.26 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 278 | 31.28 | humidity | 60 | 43200 | > th | dose independent | sin | 7 | NA |
| 363 | 31.33 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 22 |
| 394 | 31.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 397 | 31.36 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 409 | 31.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 410 | 31.36 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 20 |
| 441 | 31.38 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 495 | 31.40 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 500 | 31.40 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 513 | 31.41 | radiation | 30 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 514 | 31.41 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 538 | 31.43 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 567 | 31.46 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 582 | 31.47 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 590 | 31.47 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 10 |
| 593 | 31.47 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 641 | 31.50 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 678 | 31.53 | humidity | 70 | 43200 | < th | dose dependent | sin | 7 | NA |
| 680 | 31.53 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 691 | 31.54 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 696 | 31.54 | radiation | 30 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 714 | 31.55 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 739 | 31.56 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 753 | 31.57 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 763 | 31.57 | radiation | 20 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 790 | 31.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 8 |
| 824 | 31.61 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 858 | 31.63 | wind | 1 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 867 | 31.64 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 8 |
| 930 | 31.67 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 964 | 31.69 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 970 | 31.69 | temperature | 20 | 4320 | > th | dose dependent | sin | 22 | NA |