Os01g0111100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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Os01g0111100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidyl-prolyl cis-trans isomerase, cyclophilin type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 342.86 | 0.87 | 12.2 | -4.32 | 3.4 | 3.18 | 4.87 | 3.29 | -1.64 | 22.2 | 18.55 | 532 | 0.576 | -- |
| 354.28 | 0.877 | 12.2 | -4.86 | 3.93 | 3.73 | 4.44 | -- | -1.76 | 22.2 | 16.74 | 513 | 0.443 | -- |
| 416.05 | 0.95 | 12.2 | -5.14 | 2.9 | 2.8 | -- | -0.336 | -1.81 | 22.4 | 19.64 | 636 | 0.937 | -- |
| 415.9 | 0.95 | 12.2 | -5.08 | 2.91 | 2.81 | -- | -- | -1.79 | 22.4 | 19.54 | 626 | 0.822 | -- |
| 576.24 | 1.12 | 12.1 | -5.23 | -- | 2.71 | -- | 1.22 | -1.62 | -- | 24.42 | 1037 | 0.525 | -- |
| 524.66 | 1.07 | 12.1 | -4.22 | 2.05 | -- | 3.78 | -- | -1.18 | 21.6 | -- | -- | -- | -- |
| 577.77 | 1.13 | 12.1 | -4.36 | 2.03 | -- | -- | -- | -1.19 | 21.5 | -- | -- | -- | -- |
| 570.19 | 1.11 | 12.1 | -5.15 | -- | 2.76 | -- | -- | -1.64 | -- | 24.37 | 1041 | 1.63e-07 | -- |
| 1055.89 | 1.51 | 12.1 | -- | 3.47 | 2.06 | -- | -- | -0.951 | 20.7 | 10.85 | 494 | 2.35 | -- |
| 821.28 | 1.34 | 12 | -4.35 | -- | -- | -- | -- | -1.19 | -- | -- | -- | -- | -- |
| 1079.76 | 1.54 | 11.9 | -- | 2.03 | -- | -- | -- | -0.703 | 21.4 | -- | -- | -- | -- |
| 1215.96 | 1.62 | 11.9 | -- | -- | 1.75 | -- | -- | -0.897 | -- | 25 | 951 | 1.5e-05 | -- |
| 1320.27 | 1.7 | 11.9 | -- | -- | -- | -- | -- | -0.712 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 350.68 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 9 | 352.25 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 16 | 353.82 | temperature | 20.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 72 | 358.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 76 | 359.01 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 78 | 359.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 79 | 359.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 99 | 360.50 | temperature | 30.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 102 | 360.69 | temperature | 30.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 204 | 366.69 | temperature | 30.0 | 720 | < th | dose dependent | no | NA | NA |
| 251 | 368.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 13 |
| 259 | 368.88 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 277 | 369.21 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 281 | 369.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 288 | 369.51 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 335 | 370.32 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 363 | 370.65 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 424 | 371.63 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 459 | 372.27 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 3 | 9 |
| 487 | 372.82 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 544 | 373.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 644 | 374.37 | temperature | 15.0 | 720 | > th | dose dependent | no | NA | NA |