BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0105800 Os01g0105800|AK066672
         (138 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0105800  Similar to Iron sulfur assembly protein 1           253   2e-68
Os12g0485500  Similar to HesB/YadR/YfhF family protein            212   8e-56
AK111405                                                          120   4e-28
Os06g0146400  HesB/YadR/YfhF family protein                        83   6e-17
Os08g0369700  HesB/YadR/YfhF family protein                        67   3e-12

>Os01g0105800 Similar to Iron sulfur assembly protein 1
          Length = 138

 Score =  253 bits (647), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 19  HKQKQKQALALTDAAASRIRQLLSLRHRPYLRLGVKARGCNGLSYTLNYADEKGKFDEVV 78
           HKQKQKQALALTDAAASRIRQLLSLRHRPYLRLGVKARGCNGLSYTLNYADEKGKFDEVV
Sbjct: 19  HKQKQKQALALTDAAASRIRQLLSLRHRPYLRLGVKARGCNGLSYTLNYADEKGKFDEVV 78

Query: 79  EDKGVKVLIDPKALMHVIGTKMDYVDDPLRSEFVFINPNSKGECGCGESFMTTSSKGSTS 138
           EDKGVKVLIDPKALMHVIGTKMDYVDDPLRSEFVFINPNSKGECGCGESFMTTSSKGSTS
Sbjct: 79  EDKGVKVLIDPKALMHVIGTKMDYVDDPLRSEFVFINPNSKGECGCGESFMTTSSKGSTS 138



>Os12g0485500 Similar to HesB/YadR/YfhF family protein
          Length = 133

 Score =  212 bits (539), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 98/114 (85%), Positives = 108/114 (94%), Gaps = 1/114 (0%)

Query: 23  QKQALALTDAAASRIRQLLSLRHRPYLRLGVKARGCNGLSYTLNYADEKGKFDEVVEDKG 82
           +KQAL LTDAAASR+RQLL +R R YLRLGVKARGCNGLSYT+NYADEKGKFDE+VEDKG
Sbjct: 18  RKQALTLTDAAASRVRQLLGVRQRAYLRLGVKARGCNGLSYTMNYADEKGKFDELVEDKG 77

Query: 83  VKVLIDPKALMHVIGTKMDYVDDPLRSEFVFINPNSKGECGCGESFMT-TSSKG 135
           VK+LIDPKALMHVIGTKMD++DDPLRSEFVF+NPNSKGECGCGESFMT T +KG
Sbjct: 78  VKILIDPKALMHVIGTKMDFIDDPLRSEFVFMNPNSKGECGCGESFMTSTKNKG 131



>AK111405 
          Length = 155

 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 78/111 (70%), Gaps = 5/111 (4%)

Query: 21  QKQKQALALTDAAASRIRQLLSLRHRPY---LRLGVKARGCNGLSYTLNYADEKGKFDEV 77
           Q  + AL LT +A ++I+QLL  + +P    +++GV+ RGCNGLSYTL Y   KG  DE 
Sbjct: 45  QPTRAALTLTPSAVNKIKQLL--KDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEE 102

Query: 78  VEDKGVKVLIDPKALMHVIGTKMDYVDDPLRSEFVFINPNSKGECGCGESF 128
           V   GV+V I+ KA + ++GT+MDYV+D L SEFVF NPN KG CGCGESF
Sbjct: 103 VVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 153



>Os06g0146400 HesB/YadR/YfhF family protein
          Length = 186

 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 3/116 (2%)

Query: 26  ALALTDAAASRIRQLLSLRHRPY-LRLGVKARGCNGLSYTLNYADEKGKF--DEVVEDKG 82
           A++LT+ A   + ++ + R+    LR+GV+  GC+G+SYT+ + D       D VVE  G
Sbjct: 66  AISLTEKALKHLNKMRAERNEDLCLRIGVRQGGCSGMSYTMEFEDRSNASPDDSVVEYDG 125

Query: 83  VKVLIDPKALMHVIGTKMDYVDDPLRSEFVFINPNSKGECGCGESFMTTSSKGSTS 138
             ++ DPK+L+ + G ++DY D  +   F F NPN+   CGCG+SF T     ST+
Sbjct: 126 FAIVCDPKSLLFMFGMELDYSDALIGGGFAFQNPNATKTCGCGKSFATGKETESTA 181



>Os08g0369700 HesB/YadR/YfhF family protein
          Length = 166

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 6/108 (5%)

Query: 29  LTDAAASRIRQLLSLRHRP----YLRLGVKARGCNGLSYTLNYADEKGKFDEVVEDKGVK 84
           +TD    R+++L + +  P     LRL V+A GC+G  Y+ +  D+K   D + E +GVK
Sbjct: 60  MTDGCIRRLKELHA-KEPPSEGKMLRLSVEAGGCSGFQYSFSLDDKKNSDDRIFEKEGVK 118

Query: 85  VLIDPKALMHVIGTKMDYVDDPLRSEFVF-INPNSKGECGCGESFMTT 131
           +++D  +   V G  +DY ++ +RS FV   NP++ G C C  SFM  
Sbjct: 119 LVVDDVSYDFVKGATVDYEEELIRSAFVVSTNPSAVGGCSCKSSFMVN 166



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,848,116
Number of extensions: 142786
Number of successful extensions: 264
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 6
Length of query: 138
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 48
Effective length of database: 12,336,541
Effective search space: 592153968
Effective search space used: 592153968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)