Os12g0616200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HUELLENLOS-like protein.
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Os12g0616200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HUELLENLOS-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.47 | 0.237 | 12.7 | -0.256 | 0.675 | 0.337 | -0.165 | -0.528 | 0.114 | 20.3 | 20.15 | 1637 | -- | -- |
| 25.56 | 0.235 | 12.7 | -0.245 | 0.691 | 0.467 | -0.159 | -- | 0.131 | 20.2 | 18.9 | 3026 | -- | -- |
| 25.55 | 0.235 | 12.7 | -0.252 | 0.676 | 0.326 | -- | -0.541 | 0.114 | 20.3 | 20.21 | 1665 | -- | -- |
| 25.59 | 0.236 | 12.7 | -0.248 | 0.676 | 0.506 | -- | -- | 0.116 | 20.3 | 18.99 | 3070 | -- | -- |
| 49.84 | 0.329 | 12.7 | -0.283 | -- | 0.388 | -- | -0.424 | 0.0941 | -- | 20.05 | 2071 | -- | -- |
| 29.28 | 0.254 | 12.7 | 0.00232 | 0.671 | -- | -0.106 | -- | 0.22 | 20.3 | -- | -- | -- | -- |
| 29.32 | 0.254 | 12.7 | 0.00538 | 0.671 | -- | -- | -- | 0.22 | 20.3 | -- | -- | -- | -- |
| 49.98 | 0.329 | 12.7 | -0.206 | -- | 0.486 | -- | -- | 0.121 | -- | 19.4 | 2100 | -- | -- |
| 26.67 | 0.241 | 12.7 | -- | 0.677 | 0.353 | -- | -- | 0.166 | 20.3 | 19 | 2992 | -- | -- |
| 54.32 | 0.344 | 12.7 | 0.00123 | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
| 29.32 | 0.253 | 12.7 | -- | 0.671 | -- | -- | -- | 0.219 | 20.3 | -- | -- | -- | -- |
| 49.7 | 0.328 | 12.7 | -- | -- | 0.432 | -- | -- | 0.157 | -- | 19.5 | 544 | -- | -- |
| 54.32 | 0.344 | 12.7 | -- | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.20 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 17 |
| 2 | 24.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 3 | 24.29 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 19 |
| 4 | 24.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 5 | 24.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 8 | 24.41 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 9 | 24.43 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 14 |
| 15 | 24.54 | temperature | 25 | 10 | < th | dose dependent | sin | 14 | NA |
| 32 | 24.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 4 |
| 45 | 24.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 49 | 24.68 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 17 |
| 59 | 24.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 80 | 24.79 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 5 |
| 90 | 24.81 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 106 | 24.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 109 | 24.84 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 117 | 24.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 118 | 24.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 11 |
| 122 | 24.89 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 138 | 24.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 140 | 24.91 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 5 |
| 152 | 24.92 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 153 | 24.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 158 | 24.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 163 | 24.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 168 | 24.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 172 | 24.95 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 18 |
| 175 | 24.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 202 | 24.99 | temperature | 20 | 90 | > th | dose independent | rect. | 24 | 4 |
| 217 | 25.00 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 226 | 25.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 20 |
| 228 | 25.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 230 | 25.02 | humidity | 90 | 14400 | > th | dose independent | sin | 14 | NA |
| 235 | 25.02 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 7 |
| 242 | 25.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 246 | 25.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 279 | 25.04 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 20 |
| 286 | 25.05 | temperature | 25 | 270 | < th | dose independent | sin | 14 | NA |
| 293 | 25.05 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 309 | 25.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 318 | 25.06 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 325 | 25.06 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 344 | 25.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 356 | 25.07 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 396 | 25.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 468 | 25.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 486 | 25.12 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 487 | 25.12 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 525 | 25.13 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 554 | 25.14 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 579 | 25.15 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 580 | 25.15 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 581 | 25.15 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 622 | 25.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 632 | 25.17 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 701 | 25.19 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 734 | 25.20 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 754 | 25.21 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 755 | 25.21 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 772 | 25.21 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 777 | 25.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 800 | 25.22 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 818 | 25.23 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 831 | 25.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 909 | 25.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 930 | 25.27 | temperature | 25 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 946 | 25.28 | temperature | 25 | 270 | > th | dose independent | sin | 14 | NA |
| 949 | 25.28 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 974 | 25.29 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |