BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0616200 Os12g0616200|AK059735
(170 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46160.1 | chr5:18711456-18712341 REVERSE LENGTH=174 185 1e-47
AT1G17560.1 | chr1:6037635-6038574 REVERSE LENGTH=197 158 2e-39
ATCG00780.1 | chrC:80696-81064 REVERSE LENGTH=123 88 2e-18
AT3G04400.1 | chr3:1167339-1168308 FORWARD LENGTH=141 47 4e-06
AT2G33370.1 | chr2:14143718-14144644 REVERSE LENGTH=141 47 4e-06
AT1G04480.1 | chr1:1216110-1217257 FORWARD LENGTH=141 47 4e-06
>AT5G46160.1 | chr5:18711456-18712341 REVERSE LENGTH=174
Length = 173
Score = 185 bits (469), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 124/176 (70%), Gaps = 11/176 (6%)
Query: 1 MAAFLRSKCSSVGRTLMGGLGNNLFGAVNSSVETVSRPSHCDPIFQQIRTFIQMRTNLKV 60
MAA S+ + GR+L+GGL N G++NSS ++ QQ RTFIQM T LKV
Sbjct: 1 MAAAFASRLTRGGRSLLGGLNNG--GSMNSSNGMMNESILSQQ--QQRRTFIQMGTVLKV 56
Query: 61 VDNSGAKRVMCIQSLRGKKGARLGDTIIGSVKEAQPRXXXXXXXXXXXXXXRAAMKRGRN 120
VDNSGAK+VMCIQ+L+GKKGARLGDTI+ SVKEA P RAAM+RGR
Sbjct: 57 VDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRV 116
Query: 121 DGSEIQFDDNAIVLVNNKG-------ELIGTRVFGPVPHELRKKKHLKILALAEHI 169
DGSE++FDDNA+VLV++K + IGTRVFGPVPHELRKKKHLKILALA+H+
Sbjct: 117 DGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHV 172
>AT1G17560.1 | chr1:6037635-6038574 REVERSE LENGTH=197
Length = 196
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 118/199 (59%), Gaps = 32/199 (16%)
Query: 1 MAAFLRSKCSSVGRTLMGGLGNNLFGAVNSSVETVSRPSHCDPIFQQIRTFIQMRTNLKV 60
MA L SK S GR+L+GGL N G +NSS + S QQ RTFIQM T LK
Sbjct: 1 MATALASKLSK-GRSLLGGLCNAFSGLMNSSSNGMMNGSILSQ--QQHRTFIQMGTILKC 57
Query: 61 VDNSGAKRVMCIQSLRGKKGARLGDTIIGSVKEAQ------------PRXXXXXXXXXXX 108
VDNS AK VMCIQSLRGKKGARLGD I+GSVKEA P+
Sbjct: 58 VDNSCAKEVMCIQSLRGKKGARLGDIIVGSVKEANPIVQKKVKKDAIPKGKVKKGMVVYG 117
Query: 109 XXXRAAMKRGRNDGSEIQFDDNAIVLV---------NNKG--------ELIGTRVFGPVP 151
RAAM +GR DGS+++FDDNAIV+V N+ G + GTRVFGPVP
Sbjct: 118 VVVRAAMPKGRADGSQVKFDDNAIVVVGIKEKKGQNNSHGSKRKMEYNQPTGTRVFGPVP 177
Query: 152 HELRKKKHLKILALAEHIV 170
HE+R +K LKIL+LA+HIV
Sbjct: 178 HEMRLRKQLKILSLAQHIV 196
>ATCG00780.1 | chrC:80696-81064 REVERSE LENGTH=123
Length = 122
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 51 FIQMRTNLKVVDNSGAKRVMCIQSL--RGKKGARLGDTIIGSVKEAQPRXXXXXXXXXXX 108
IQ +T L V DNSGA+ +MCI+ + ++ A +GD I+ +KEA P
Sbjct: 1 MIQPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRA 60
Query: 109 XXXRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHELRKKKHLKILALAEH 168
R + RN+G+ I++DDNA V+++ +G GTRVFG +P ELR+ KI++LA
Sbjct: 61 VIVRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPE 120
Query: 169 IV 170
++
Sbjct: 121 VL 122
>AT3G04400.1 | chr3:1167339-1168308 FORWARD LENGTH=141
Length = 140
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 62 DNSGAKRVMCIQSLRGKKG-------ARLGDTIIGSVKEAQPRXXXXXXXXXXXXXXRAA 114
DN+GAK + I S++G KG A +GD ++ +VK+ +P +
Sbjct: 30 DNTGAKNLYII-SVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPW 88
Query: 115 MKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
R DG + F+DNA V+VN KGE+ G+ + GP+ E
Sbjct: 89 R---RKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124
>AT2G33370.1 | chr2:14143718-14144644 REVERSE LENGTH=141
Length = 140
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 62 DNSGAKRVMCIQSLRGKKG-------ARLGDTIIGSVKEAQPRXXXXXXXXXXXXXXRAA 114
DN+GAK + I S++G KG A +GD ++ +VK+ +P +
Sbjct: 30 DNTGAKNLYII-SVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPW 88
Query: 115 MKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
R DG + F+DNA V+VN KGE+ G+ + GP+ E
Sbjct: 89 R---RKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124
>AT1G04480.1 | chr1:1216110-1217257 FORWARD LENGTH=141
Length = 140
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 62 DNSGAKRVMCIQSLRGKKG-------ARLGDTIIGSVKEAQPRXXXXXXXXXXXXXXRAA 114
DN+GAK + I S++G KG A +GD ++ +VK+ +P +
Sbjct: 30 DNTGAKNLYII-SVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPW 88
Query: 115 MKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
R DG + F+DNA V+VN KGE+ G+ + GP+ E
Sbjct: 89 R---RKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 124
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,109,388
Number of extensions: 104194
Number of successful extensions: 289
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 6
Length of query: 170
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 79
Effective length of database: 8,611,713
Effective search space: 680325327
Effective search space used: 680325327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)