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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0612500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Modification methylase HemK family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.75 (0.0343) R2 : 0.689
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.56 (0.0818) R2dC : 0.25 R2C : 0.282
β3 : -1.81 (0.0754) R2dE : 0.395 R2E : 0.435
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.176 (0.0723) R2dN8 : 0.00526 R2N8 : 0.011
σ : 0.643
deviance : 190.83
__
_____
C
peak time of C : 12.7
E
wheather : precipitation
threshold : 0.4314
memory length : 79
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.16
open length of G : 6.05

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.39 0.641 5.76 -0.406 1.55 -1.8 0.386 -0.249 -0.222 12.7 0.4075 88 3.07 6.02
186.56 0.636 5.76 -0.39 1.56 -1.8 0.394 -- -0.22 12.7 0.4897 86 3.08 6.05
186.97 0.637 5.76 -0.393 1.55 -1.8 -- -0.253 -0.222 12.7 0.4685 85 3.09 6.05
187.14 0.637 5.76 -0.376 1.56 -1.8 -- -- -0.219 12.7 0.4887 81 3.14 6.05
317.22 0.83 5.78 -0.361 -- -1.92 -- -0.0423 -0.251 -- 1.102 76 2.93 5.43
279.39 0.784 5.83 -0.445 2.39 -- 0.304 -- -0.331 15.6 -- -- -- --
279.67 0.783 5.83 -0.44 2.39 -- -- -- -0.329 15.6 -- -- -- --
316.34 0.828 5.8 -0.401 -- -1.92 -- -- -0.27 -- 0.226 75 2.93 5.41
190.83 0.643 5.75 -- 1.56 -1.81 -- -- -0.176 12.7 0.4314 79 3.16 6.05
597.32 1.14 5.82 -0.54 -- -- -- -- -0.393 -- -- -- -- --
284.78 0.789 5.82 -- 2.4 -- -- -- -0.28 15.6 -- -- -- --
320.68 0.834 5.79 -- -- -1.94 -- -- -0.229 -- 0.4232 75 2.92 5.41
605.03 1.15 5.81 -- -- -- -- -- -0.333 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.71 precipitation 0.1 90 < th dose independent rect. 3 6
2 186.71 precipitation 0.1 90 < th dose dependent rect. 3 6
3 187.50 wind 9.0 90 < th dose independent rect. 9 18
4 187.69 temperature 30.0 90 < th dose independent rect. 3 6
5 188.07 temperature 10.0 90 > th dose dependent rect. 8 7
6 188.57 wind 7.0 90 < th dose independent rect. 3 6
7 188.64 precipitation 0.1 270 < th dose independent rect. 1 7
8 188.64 precipitation 0.1 270 < th dose dependent rect. 1 7
10 188.86 temperature 10.0 90 > th dose independent rect. 3 6
12 188.86 humidity 50.0 90 > th dose independent rect. 3 6
13 188.86 atmosphere 995.0 90 > th dose independent rect. 3 6
14 188.86 atmosphere 1015.0 90 < th dose independent rect. 3 6
15 188.86 temperature 10.0 90 > th dose independent rect. 9 18
16 189.04 wind 9.0 90 < th dose dependent rect. 3 6
19 189.62 radiation 40.0 90 < th dose independent rect. 3 6
21 189.65 temperature 10.0 10 > th dose dependent rect. 9 7
22 189.66 precipitation 0.1 90 < th dose independent rect. 9 18
23 189.66 precipitation 0.1 90 < th dose dependent rect. 9 18
25 190.23 atmosphere 995.0 270 > th dose independent rect. 3 16
28 190.89 wind 7.0 270 < th dose independent rect. 1 7
33 191.64 temperature 15.0 270 > th dose independent rect. 7 8
34 191.66 radiation 40.0 270 < th dose independent rect. 1 7
36 191.71 temperature 10.0 270 > th dose independent rect. 1 7
38 191.71 temperature 30.0 270 < th dose independent rect. 1 7
39 191.71 humidity 50.0 270 > th dose independent rect. 1 7
41 191.71 atmosphere 995.0 270 > th dose independent rect. 1 7
42 191.71 atmosphere 1015.0 270 < th dose independent rect. 1 7
46 191.88 precipitation 0.1 270 < th dose independent rect. 3 16
47 191.88 precipitation 0.1 270 < th dose dependent rect. 3 16
49 192.14 wind 9.0 270 < th dose independent rect. 19 8
50 192.31 temperature 10.0 270 > th dose independent rect. 19 8
51 192.31 temperature 30.0 270 < th dose independent rect. 19 8
52 192.31 humidity 50.0 270 > th dose independent rect. 19 8
53 192.31 atmosphere 995.0 270 > th dose independent rect. 19 8
54 192.31 radiation 1.0 270 < th dose independent rect. 19 8
59 192.31 temperature 10.0 270 > th dose independent rect. 3 16
60 192.31 atmosphere 1015.0 270 < th dose independent rect. 3 16
61 192.31 radiation 10.0 270 < th dose dependent rect. 19 8
68 192.55 atmosphere 995.0 270 > th dose independent rect. 15 16
74 192.96 radiation 40.0 270 < th dose dependent rect. 1 8
83 194.03 precipitation 0.1 270 < th dose independent rect. 3 3
84 194.03 precipitation 0.1 270 < th dose dependent rect. 3 3
95 194.43 humidity 50.0 270 > th dose dependent rect. 19 7
96 194.53 humidity 60.0 90 > th dose dependent rect. 21 6
99 194.96 wind 9.0 270 < th dose independent rect. 3 16
102 195.05 precipitation 0.1 270 < th dose independent rect. 19 8
103 195.05 precipitation 0.1 270 < th dose dependent rect. 19 8
108 195.38 wind 9.0 270 < th dose independent rect. 7 8
109 195.42 precipitation 0.1 270 < th dose independent rect. 15 16
110 195.42 radiation 40.0 270 < th dose independent rect. 14 17
111 195.42 precipitation 0.1 270 < th dose dependent rect. 15 16
113 195.58 wind 5.0 270 < th dose independent rect. 3 3
121 195.91 wind 9.0 90 < th dose dependent rect. 9 18
126 196.07 atmosphere 995.0 270 > th dose independent rect. 13 8
135 196.27 precipitation 0.1 270 < th dose independent rect. 7 8
136 196.27 precipitation 0.1 270 < th dose dependent rect. 7 8
140 196.44 wind 9.0 270 < th dose dependent rect. 3 3
160 196.57 wind 9.0 270 < th dose independent rect. 6 21
163 196.62 radiation 1.0 270 > th dose independent rect. 7 7
172 196.82 atmosphere 1015.0 270 < th dose independent rect. 7 8
173 196.82 wind 1.0 270 > th dose independent rect. 12 9
174 196.82 temperature 10.0 270 > th dose independent rect. 15 16
178 196.90 atmosphere 995.0 270 > th dose independent rect. 7 7
184 196.96 wind 9.0 270 < th dose independent rect. 7 19
194 197.35 temperature 10.0 270 > th dose independent rect. 3 3
196 197.35 temperature 30.0 270 < th dose independent rect. 3 3
197 197.35 humidity 50.0 270 > th dose independent rect. 3 3
200 197.35 atmosphere 995.0 270 > th dose independent rect. 3 3
201 197.35 atmosphere 1015.0 270 < th dose independent rect. 3 3
202 197.35 radiation 20.0 270 < th dose independent rect. 3 3
205 197.35 temperature 10.0 270 > th dose independent rect. 6 21
206 197.36 wind 9.0 270 < th dose independent rect. 15 16
209 197.55 wind 9.0 270 < th dose independent rect. 21 16
219 197.61 temperature 15.0 270 > th dose independent rect. 13 8
232 197.70 temperature 10.0 270 > th dose independent rect. 7 19
248 197.98 radiation 40.0 270 < th dose dependent rect. 3 3
261 198.39 radiation 40.0 90 < th dose independent rect. 3 18
275 198.50 wind 9.0 270 < th dose dependent rect. 1 7
286 198.68 radiation 20.0 10 < th dose independent rect. 4 19
301 198.76 precipitation 0.1 270 < th dose independent rect. 7 19
302 198.76 precipitation 0.1 270 < th dose dependent rect. 7 19
319 198.89 temperature 10.0 270 > th dose independent rect. 21 16
320 198.89 atmosphere 995.0 270 > th dose independent rect. 21 16
324 198.97 atmosphere 1015.0 270 < th dose independent rect. 13 8
329 199.13 precipitation 0.1 270 < th dose independent rect. 6 21
330 199.13 precipitation 0.1 270 < th dose dependent rect. 6 21
339 199.29 humidity 50.0 270 > th dose independent rect. 7 7
345 199.36 radiation 40.0 10 < th dose independent rect. 3 7
352 199.63 radiation 40.0 10 < th dose dependent rect. 4 19
364 199.92 wind 9.0 270 < th dose independent rect. 13 8
370 200.01 temperature 10.0 90 > th dose dependent rect. 3 6
380 200.13 atmosphere 995.0 90 > th dose independent rect. 9 18
415 200.48 wind 9.0 270 < th dose dependent rect. 19 7
418 200.51 humidity 50.0 270 > th dose independent rect. 21 16
424 200.57 wind 9.0 270 < th dose dependent rect. 7 7
455 200.98 precipitation 0.1 270 < th dose independent rect. 13 8
456 200.98 precipitation 0.1 270 < th dose dependent rect. 13 8
461 201.10 humidity 50.0 270 > th dose dependent rect. 3 3
469 201.29 humidity 50.0 90 > th dose dependent rect. 3 6
505 201.91 humidity 50.0 270 > th dose independent rect. 8 17
524 202.09 radiation 40.0 90 < th dose dependent rect. 3 18
530 202.26 precipitation 0.1 10 < th dose independent rect. 3 6
531 202.26 precipitation 0.1 10 < th dose dependent rect. 3 6
555 202.51 temperature 10.0 270 > th dose dependent rect. 20 17
563 202.64 wind 1.0 270 > th dose independent rect. 7 7
568 202.69 wind 9.0 90 < th dose dependent rect. 21 6
575 202.83 humidity 50.0 270 > th dose dependent rect. 1 7
583 202.93 humidity 90.0 90 < th dose independent rect. 9 6
592 203.09 temperature 10.0 270 > th dose dependent rect. 21 15
642 203.48 precipitation 0.1 270 < th dose independent rect. 21 16
643 203.48 precipitation 0.1 270 < th dose dependent rect. 21 16
673 203.85 atmosphere 1015.0 90 < th dose independent rect. 9 18
675 203.87 temperature 15.0 10 > th dose independent rect. 16 17
676 203.90 temperature 30.0 10 < th dose independent rect. 3 7
697 204.04 wind 9.0 10 < th dose independent rect. 9 7
715 204.05 humidity 60.0 270 > th dose dependent rect. 23 1
736 204.22 humidity 50.0 270 > th dose independent rect. 7 19
749 204.32 atmosphere 995.0 10 > th dose independent rect. 16 17
773 204.65 radiation 1.0 10 > th dose independent rect. 9 7
778 204.70 precipitation 0.1 10 < th dose independent rect. 16 17
779 204.70 precipitation 0.1 10 < th dose dependent rect. 16 17
799 204.88 temperature 10.0 270 > th dose dependent rect. 3 3
822 205.11 temperature 10.0 90 > th dose dependent rect. 9 18
824 205.12 wind 9.0 10 < th dose independent rect. 16 17
847 205.21 wind 5.0 270 < th dose independent rect. 21 4
850 205.22 temperature 10.0 10 > th dose independent rect. 9 7
852 205.22 atmosphere 1015.0 10 < th dose independent rect. 9 7
853 205.22 precipitation 0.1 10 < th dose independent rect. 9 7
855 205.22 precipitation 0.1 10 < th dose dependent rect. 9 7
899 205.61 humidity 80.0 270 > th dose independent rect. 21 4
900 205.61 atmosphere 1015.0 270 < th dose independent rect. 14 17
942 205.89 temperature 10.0 10 > th dose dependent rect. 9 18
945 205.97 humidity 90.0 10 < th dose independent rect. 9 7
948 205.98 atmosphere 1015.0 90 < th dose dependent rect. 3 6