BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0612500 Os12g0612500|Os12g0612500
         (353 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0612500  Modification methylase HemK family protein          474   e-134

>Os12g0612500 Modification methylase HemK family protein
          Length = 353

 Score =  474 bits (1221), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/338 (74%), Positives = 251/338 (74%)

Query: 16  PGRLKPKPTPXXXXXXXXXXXXXXXXXXXXXGGAGVEAEADTTPLFLRPXXXXXXXXXXX 75
           PGRLKPKPTP                     GGAGVEAEADTTPLFLRP           
Sbjct: 16  PGRLKPKPTPRLLKRLATASSSASTPPSPRSGGAGVEAEADTTPLFLRPAAHPVAAASLA 75

Query: 76  XXXXXXXELVPDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESLWLRHVRDRRP 135
                  ELVPDS                                  ESLWLRHVRDRRP
Sbjct: 76  AFRRRAAELVPDSAPHLHRHLRWLLADAAARDAGADPALLRAPLGDLESLWLRHVRDRRP 135

Query: 136 FQYVVGNEHWRDLVVAVREGVLIPRPETEAVVDMVAKVQGFEAGWWADLGTGSGAIAVAV 195
           FQYVVGNEHWRDLVVAVREGVLIPRPETEAVVDMVAKVQGFEAGWWADLGTGSGAIAVAV
Sbjct: 136 FQYVVGNEHWRDLVVAVREGVLIPRPETEAVVDMVAKVQGFEAGWWADLGTGSGAIAVAV 195

Query: 196 ARMLGPEGRVFATDVSEVAIDVARLNVQRYGMQDKVEIRHGSWFEPLEDLKGKLMGVISN 255
           ARMLGPEGRVFATDVSEVAIDVARLNVQRYGMQDKVEIRHGSWFEPLEDLKGKLMGVISN
Sbjct: 196 ARMLGPEGRVFATDVSEVAIDVARLNVQRYGMQDKVEIRHGSWFEPLEDLKGKLMGVISN 255

Query: 256 PPYIPTEDLPGLQPEVGWHEPKLALDGGKDXXXXXXXXXXXXXXVLKPGGFFVFETNGNK 315
           PPYIPTEDLPGLQPEVGWHEPKLALDGGKD              VLKPGGFFVFETNGNK
Sbjct: 256 PPYIPTEDLPGLQPEVGWHEPKLALDGGKDGLEHLLHLCEGLSSVLKPGGFFVFETNGNK 315

Query: 316 QSEFLVDFIQTKWDSSFRDVEAVLDFADIKRFVTGYRR 353
           QSEFLVDFIQTKWDSSFRDVEAVLDFADIKRFVTGYRR
Sbjct: 316 QSEFLVDFIQTKWDSSFRDVEAVLDFADIKRFVTGYRR 353



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,680,249
Number of extensions: 370546
Number of successful extensions: 871
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 251
Effective length of database: 11,709,973
Effective search space: 2939203223
Effective search space used: 2939203223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)