BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0612500 Os12g0612500|Os12g0612500
         (353 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64150.1  | chr5:25668997-25670731 REVERSE LENGTH=378          283   1e-76

>AT5G64150.1 | chr5:25668997-25670731 REVERSE LENGTH=378
          Length = 377

 Score =  283 bits (723), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 139/233 (59%), Positives = 173/233 (74%), Gaps = 5/233 (2%)

Query: 125 LWLRHVRDRRPFQYVVGNEHWRDLVVAVREGVLIPRPETEAVVDMVAKV----QGFEAGW 180
           LW + +  RRPFQYVVG EHWRDLV+ V EGVLIPRPETE +VDMV ++    + F+   
Sbjct: 144 LWRQRIEKRRPFQYVVGCEHWRDLVLCVEEGVLIPRPETELIVDMVEELVTRDEWFKKDI 203

Query: 181 WADLGTGSGAIAVAVARMLGPEGRVFATDVSEVAIDVARLNVQRYGMQDKVEIRHGSWFE 240
           WADLGTGSGAIA+ +A++LG  GRV ATD+S VAI VA  NVQRY ++  +E+R GSWFE
Sbjct: 204 WADLGTGSGAIAIGIAKVLGSRGRVIATDLSPVAIAVAGHNVQRYSLEGMIEVREGSWFE 263

Query: 241 PLEDLKGKLMGVISNPPYIPTEDLPGLQPEVGWHEPKLALDGGKDXXXXXXXXXXXXXXV 300
           PL+DL+GKL+G++SNPPYIP++D+PGLQ EVG HEPKLALDGG D              +
Sbjct: 264 PLKDLEGKLVGLVSNPPYIPSDDIPGLQAEVGRHEPKLALDGGIDGTDSLFHLCHGASRM 323

Query: 301 LKPGGFFVFETNGNKQSEFLVDFIQTK-WDSSFRDVEAVLDFADIKRFVTGYR 352
           L+PGGFFVFETNG KQS+ +VD++ T      F D++ V DFA I RFVTG+R
Sbjct: 324 LQPGGFFVFETNGEKQSKMIVDYMMTSDLKDCFSDLKIVSDFAGINRFVTGFR 376



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,849,068
Number of extensions: 213899
Number of successful extensions: 429
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,364,969
Effective search space: 2116337157
Effective search space used: 2116337157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)