Os12g0611900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycosyl transferase, family 17 protein.
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Os12g0611900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycosyl transferase, family 17 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.34 | 0.362 | 8.3 | 1.3 | 0.645 | 0.52 | -1.4 | -1.39 | 0.0999 | 15.7 | 10 | 1440 | -- | -- |
| 62.92 | 0.369 | 8.29 | 1.44 | 0.608 | 0.549 | -1.31 | -- | 0.0923 | 15.6 | 10 | 1379 | -- | -- |
| 65.2 | 0.376 | 8.3 | 1.3 | 0.645 | 0.522 | -- | -1.29 | 0.0996 | 15.7 | 10 | 1444 | -- | -- |
| 67.8 | 0.384 | 8.3 | 1.5 | 0.678 | 0.52 | -- | -- | 0.164 | 15.5 | 10 | 1376 | -- | -- |
| 65.57 | 0.377 | 8.25 | 1.68 | -- | 0.693 | -- | -1.35 | 0.269 | -- | 1.576 | 502 | -- | -- |
| 69.2 | 0.39 | 8.23 | 1.68 | 0.639 | -- | -1.47 | -- | 0.334 | 15.7 | -- | -- | -- | -- |
| 75.62 | 0.407 | 8.24 | 1.66 | 0.631 | -- | -- | -- | 0.326 | 15.7 | -- | -- | -- | -- |
| 72.85 | 0.398 | 8.24 | 1.63 | -- | 0.667 | -- | -- | 0.294 | -- | 0.95 | 499 | -- | -- |
| 126.35 | 0.524 | 8.3 | -- | 0.644 | 0.78 | -- | -- | 0.16 | 15.4 | 10 | 1385 | -- | -- |
| 97.61 | 0.462 | 8.23 | 1.63 | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
| 148 | 0.569 | 8.28 | -- | 0.598 | -- | -- | -- | 0.141 | 15.8 | -- | -- | -- | -- |
| 141.34 | 0.554 | 8.29 | -- | -- | 0.861 | -- | -- | 0.103 | -- | 10.01 | 617 | -- | -- |
| 167.78 | 0.605 | 8.27 | -- | -- | -- | -- | -- | 0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.48 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 2 | 52.53 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 4 | 52.68 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 7 | 52.92 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 11 | 53.06 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 18 | 53.48 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 25 | 53.60 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 34 | 53.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 35 | 53.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 40 | 53.88 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 5 |
| 59 | 54.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 60 | 54.43 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 86 | 54.77 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 96 | 54.91 | wind | 9 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 115 | 55.21 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 17 |
| 129 | 55.32 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 155 | 55.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 156 | 55.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 183 | 55.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 215 | 55.79 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 217 | 55.79 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 219 | 55.79 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 270 | 55.79 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 272 | 55.79 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 274 | 55.79 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 412 | 56.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 450 | 56.39 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 7 |
| 482 | 56.46 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 488 | 56.47 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 523 | 56.59 | humidity | 60 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 571 | 56.74 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 627 | 56.93 | wind | 5 | 4320 | > th | dose independent | sin | 16 | NA |
| 630 | 56.93 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 641 | 56.94 | wind | 7 | 4320 | < th | dose independent | sin | 17 | NA |
| 652 | 56.97 | wind | 3 | 4320 | > th | dose dependent | sin | 16 | NA |
| 653 | 56.97 | wind | 9 | 4320 | < th | dose dependent | rect. | 15 | 8 |
| 673 | 57.04 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 725 | 57.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 739 | 57.17 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 772 | 57.23 | wind | 9 | 4320 | < th | dose dependent | rect. | 15 | 10 |
| 789 | 57.28 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 800 | 57.28 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 842 | 57.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 843 | 57.40 | radiation | 1 | 720 | > th | dose independent | sin | 18 | NA |
| 859 | 57.44 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 898 | 57.50 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 914 | 57.51 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |