BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0611900 Os12g0611900|AK101128
(364 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G13290.1 | chr2:5512058-5513143 FORWARD LENGTH=362 445 e-125
AT1G12990.1 | chr1:4433973-4435552 FORWARD LENGTH=393 410 e-115
AT3G27540.1 | chr3:10205489-10206888 FORWARD LENGTH=391 404 e-113
AT1G67880.1 | chr1:25454081-25455453 REVERSE LENGTH=391 402 e-112
AT5G14480.1 | chr5:4667984-4669693 FORWARD LENGTH=388 388 e-108
AT3G01620.1 | chr3:235327-236729 REVERSE LENGTH=389 375 e-104
AT3G26445.1 | chr3:9680120-9680746 REVERSE LENGTH=119 80 2e-15
>AT2G13290.1 | chr2:5512058-5513143 FORWARD LENGTH=362
Length = 361
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 207/326 (63%), Positives = 255/326 (78%), Gaps = 2/326 (0%)
Query: 39 FHNISYLLRPLWDTPPKPFIRIPHYYAPNISMPQLCQLHGWGILPTPRRVFDAVLFSNEL 98
F ISYL RPLWD PP PF RIPHYYA N+SM LC+LHGW PRRVFDA++FSNEL
Sbjct: 34 FQTISYLFRPLWDKPPPPFKRIPHYYAENVSMGHLCELHGWTPRLEPRRVFDAIIFSNEL 93
Query: 99 DILEIRYGELLPYVDRFVILEANATFTGIPKSLSFLENINRFAFAGSKIVYDMLPVMEMD 158
D+LE+R+ EL PYV +FVILE+N TFTGIPK L F N RFAFA KIV+ + P +
Sbjct: 94 DLLEVRWRELEPYVSKFVILESNTTFTGIPKPLFFDSNKERFAFAEGKIVHGVFPGKKRS 153
Query: 159 PGS-HRQPFHVEAGHRRALNMLLRRSGIAVGDVLIMADADEIPSPETVQLLKWCDGIPQV 217
G + PF +E R A+N LLR +G++ GD +IM+DADEIPSP TV+ L+WCDGIP V
Sbjct: 154 TGQPYEDPFLLEGQQRVAMNWLLREAGVSDGDAVIMSDADEIPSPHTVKFLQWCDGIPDV 213
Query: 218 MHLELKNYMYSFEFPIDYNSWRATAHVFTEH-TLYRHSRQSNLLLADAGWHCSFCFKDIK 276
MHLE++ YMYSFEFP+DY+SWRA+ H+++ T YRHSRQ++L+L+DAGWHCSFCF+ +
Sbjct: 214 MHLEMREYMYSFEFPVDYSSWRASVHIYSRKWTQYRHSRQTDLILSDAGWHCSFCFRRLN 273
Query: 277 EFAFKMKAYSHADRVKQDSFLNPDRIQRVICNGEDLFDMLPEEYTFKDLFKKMGPIPKSG 336
EF FKMK YSHADRVK+ FL+ RIQ+ IC G DLFDMLPE+Y+F++L K+GPIP S
Sbjct: 274 EFVFKMKGYSHADRVKRKEFLDYQRIQKHICKGYDLFDMLPEKYSFQELISKIGPIPPSA 333
Query: 337 SAVHLPSYLIKNADKFRFLLPGGCLR 362
SAVHLP++LI+NA +FRFLLPGGCLR
Sbjct: 334 SAVHLPAFLIQNAARFRFLLPGGCLR 359
>AT1G12990.1 | chr1:4433973-4435552 FORWARD LENGTH=393
Length = 392
Score = 410 bits (1055), Expect = e-115, Method: Compositional matrix adjust.
Identities = 197/324 (60%), Positives = 242/324 (74%), Gaps = 4/324 (1%)
Query: 40 HNISYLLRPLWDTPPKPFIRIPHYYAPNISMPQLCQLHGWGILPTPRRVFDAVLFSNELD 99
ISY LRPLW++PPKPF IPHYY N SM LC+LHGWG+ PRRV+DAVLFSNELD
Sbjct: 69 QKISYFLRPLWESPPKPFHDIPHYYHENASMETLCKLHGWGVRDYPRRVYDAVLFSNELD 128
Query: 100 ILEIRYGELLPYVDRFVILEANATFTGIPKSLSFLENINRFAFAGSKIVYDMLPVMEMDP 159
IL +R+ EL PY+ +FV+LE+N TFTG+PK L F + + F F S++ Y + +
Sbjct: 129 ILAVRWRELFPYITQFVLLESNTTFTGLPKPLVFAAHRDEFKFIESRLTYGTVGGRFVKG 188
Query: 160 GSHRQPFHVEAGHRRALNMLLRRSGIAVGDVLIMADADEIPSPETVQLLKWCDGIPQVMH 219
+ PF+ EA R AL+ LLR +GI D+L+M+D DEIPS T+ LL+WCD IP+++H
Sbjct: 189 ---QNPFYEEAYQRVALDQLLRIAGITDDDLLLMSDVDEIPSRHTINLLRWCDEIPKILH 245
Query: 220 LELKNYMYSFEFPIDYNSWRATAHVF-TEHTLYRHSRQSNLLLADAGWHCSFCFKDIKEF 278
L LKNY+YSFEF +D SWRA+ H + T T Y H RQS+ +LADAGWHCSFCF+ I EF
Sbjct: 246 LRLKNYLYSFEFLVDNKSWRASIHRYETGKTRYAHYRQSDEILADAGWHCSFCFRRISEF 305
Query: 279 AFKMKAYSHADRVKQDSFLNPDRIQRVICNGEDLFDMLPEEYTFKDLFKKMGPIPKSGSA 338
FKMKAYSH DRV+ FLNP R+QRVIC G DLFDMLPEEYTFK++ KMGPIP S SA
Sbjct: 306 IFKMKAYSHNDRVRFGHFLNPKRVQRVICKGADLFDMLPEEYTFKEIIGKMGPIPHSFSA 365
Query: 339 VHLPSYLIKNADKFRFLLPGGCLR 362
VHLPSYL++NADK+RFLLPG C+R
Sbjct: 366 VHLPSYLLENADKYRFLLPGNCIR 389
>AT3G27540.1 | chr3:10205489-10206888 FORWARD LENGTH=391
Length = 390
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/327 (58%), Positives = 242/327 (74%), Gaps = 10/327 (3%)
Query: 40 HNISYLLRPLWDTPPKPFIRIPHYYAPNISMPQLCQLHGWGILPTPRRVFDAVLFSNELD 99
+Y RPLW++PPKPF IPHYY N++M LC LHGWGI +PRRVFDAVLFSNE D
Sbjct: 63 QKFTYFFRPLWESPPKPFQTIPHYYNENVTMESLCSLHGWGIRDSPRRVFDAVLFSNEKD 122
Query: 100 ILEIRYGELLPYVDRFVILEANATFTGIPKSLSFLENINRFAFAGSKIVYDMLPVMEMDP 159
+L +R+ EL PYV +FVILE+N+TFTG+PK L F N ++F F ++ Y +
Sbjct: 123 LLTVRWNELYPYVTQFVILESNSTFTGLPKPLVFKSNKDQFKFVEPRLTYGTIG------ 176
Query: 160 GSHRQ---PFHVEAGHRRALNMLLRRSGIAVGDVLIMADADEIPSPETVQLLKWCDGIPQ 216
G R+ PF EA R AL+ LLR +GI D+LIM+D DEIPS T+ LL+WCD IP
Sbjct: 177 GRFRKGENPFVEEAYQRVALDQLLRIAGIQEDDLLIMSDVDEIPSAHTINLLRWCDDIPP 236
Query: 217 VMHLELKNYMYSFEFPIDYNSWRATAHVFT-EHTLYRHSRQSNLLLADAGWHCSFCFKDI 275
V+HL+LKNY+YSFE+ +D SWRA+ H ++ T Y H RQSN++LAD+GWHCSFCF+ I
Sbjct: 237 VLHLQLKNYLYSFEYYVDSKSWRASIHRYSPGKTRYAHFRQSNVMLADSGWHCSFCFRYI 296
Query: 276 KEFAFKMKAYSHADRVKQDSFLNPDRIQRVICNGEDLFDMLPEEYTFKDLFKKMGPIPKS 335
EF FKMKAYSH+DRV+ +LNP RIQ VIC G DLFDMLPEEYTFK++ KMGP+P+S
Sbjct: 297 SEFIFKMKAYSHSDRVRFSHYLNPRRIQDVICKGTDLFDMLPEEYTFKEIIGKMGPVPRS 356
Query: 336 GSAVHLPSYLIKNADKFRFLLPGGCLR 362
SAVHLPSYL+ NA+++++LLPG C+R
Sbjct: 357 YSAVHLPSYLLYNAEQYKYLLPGNCIR 383
>AT1G67880.1 | chr1:25454081-25455453 REVERSE LENGTH=391
Length = 390
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/323 (58%), Positives = 241/323 (74%), Gaps = 3/323 (0%)
Query: 41 NISYLLRPLWDTPPKPFIRIPHYYAPNISMPQLCQLHGWGILPTPRRVFDAVLFSNELDI 100
ISY LRPLW++PPKPF IPHY+ N SM LC+LHGW PRRV+DAVLFS E+++
Sbjct: 67 KISYFLRPLWESPPKPFHEIPHYHHENASMESLCKLHGWRTREYPRRVYDAVLFSTEVEL 126
Query: 101 LEIRYGELLPYVDRFVILEANATFTGIPKSLSFLENINRFAFAGSKIVYDMLPVMEMDPG 160
L IR+ EL PYV +FV+LE+N+TFTG+PK L F + + F F ++ Y +
Sbjct: 127 LTIRWKELYPYVTQFVLLESNSTFTGLPKPLVFAGHRDEFKFIEPRLTYG--SIGGRFKK 184
Query: 161 SHRQPFHVEAGHRRALNMLLRRSGIAVGDVLIMADADEIPSPETVQLLKWCDGIPQVMHL 220
+ PF+ EA R AL+ LLR +GI D+LIM+D DEIPS T+ LL+WCD IPQ++HL
Sbjct: 185 GEKNPFYEEAYQRIALDQLLRIAGITDDDLLIMSDVDEIPSRHTINLLRWCDDIPQILHL 244
Query: 221 ELKNYMYSFEFPIDYNSWRATAHVF-TEHTLYRHSRQSNLLLADAGWHCSFCFKDIKEFA 279
LKNY+YSFEFP+D SWRA+ H + T T Y H RQS+++LAD+GWHCSFCF+ I EF
Sbjct: 245 RLKNYLYSFEFPVDDKSWRASVHRYQTGKTRYAHYRQSDVILADSGWHCSFCFRRISEFV 304
Query: 280 FKMKAYSHADRVKQDSFLNPDRIQRVICNGEDLFDMLPEEYTFKDLFKKMGPIPKSGSAV 339
FKMKAYSH DRV+ +LNP R+QRVIC+G DLFDM+PEEYTFKD+ KMGPIP S SAV
Sbjct: 305 FKMKAYSHYDRVRFAHYLNPKRVQRVICSGSDLFDMIPEEYTFKDIIGKMGPIPHSYSAV 364
Query: 340 HLPSYLIKNADKFRFLLPGGCLR 362
HLP+YL++NA++++FLLPG CLR
Sbjct: 365 HLPAYLLENAERYKFLLPGNCLR 387
>AT5G14480.1 | chr5:4667984-4669693 FORWARD LENGTH=388
Length = 387
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 185/324 (57%), Positives = 236/324 (72%), Gaps = 4/324 (1%)
Query: 40 HNISYLLRPLWDTPPKPFIRIPHYYAPNISMPQLCQLHGWGILPTPRRVFDAVLFSNELD 99
++Y LRPLW++PPKPF +PHYY N SM LC LHGW +PRRVFDAVLFSNE+D
Sbjct: 64 QKLTYFLRPLWESPPKPFQTLPHYYHENASMATLCSLHGWKHRESPRRVFDAVLFSNEVD 123
Query: 100 ILEIRYGELLPYVDRFVILEANATFTGIPKSLSFLENINRFAFAGSKIVYDMLPVMEMDP 159
+L IR+ EL PY+ +FVILE+N+TFTG+PK L F N +F FA ++ Y +
Sbjct: 124 MLTIRWKELYPYITQFVILESNSTFTGLPKPLVFNGNRAKFEFAEPRLSYGNI-AGRFKK 182
Query: 160 GSHRQPFHVEAGHRRALNMLLRRSGIAVGDVLIMADADEIPSPETVQLLKWCDGIPQVMH 219
G + PF EA R AL+ L+R +GI D+LIM+D DEIPS T+ LL+WCDG P ++H
Sbjct: 183 GEN--PFVEEAYQRIALDQLIRLAGIEEDDLLIMSDVDEIPSAHTINLLRWCDGYPPILH 240
Query: 220 LELKNYMYSFEFPIDYNSWRATAHVFT-EHTLYRHSRQSNLLLADAGWHCSFCFKDIKEF 278
L+LKNY+YSFE+ +D SWRA+ H + T Y H RQ N LLAD+GWHCSFCF+ I EF
Sbjct: 241 LQLKNYLYSFEYFVDNKSWRASIHQYKPGKTRYAHFRQGNTLLADSGWHCSFCFRHISEF 300
Query: 279 AFKMKAYSHADRVKQDSFLNPDRIQRVICNGEDLFDMLPEEYTFKDLFKKMGPIPKSGSA 338
FKMKAYSH DRV+ +LNP RIQ VIC G DLFDMLPEEYTF+++ K+GPIP+S SA
Sbjct: 301 IFKMKAYSHNDRVRFSHYLNPKRIQDVICKGTDLFDMLPEEYTFREIIGKLGPIPRSYSA 360
Query: 339 VHLPSYLIKNADKFRFLLPGGCLR 362
VHLP++LI+ A+ +++LLPG C+R
Sbjct: 361 VHLPAHLIEKAESYKYLLPGNCIR 384
>AT3G01620.1 | chr3:235327-236729 REVERSE LENGTH=389
Length = 388
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/329 (54%), Positives = 237/329 (72%), Gaps = 7/329 (2%)
Query: 38 YFHN--ISYLLRPLWDTPPKPFIRIPHYYAPNISMPQLCQLHGWGILPTPRRVFDAVLFS 95
Y H I+Y LRPLW++PPKPF +PHYY N SM LC LHGW + +PRRVFDA LFS
Sbjct: 60 YLHGQKITYFLRPLWESPPKPFNILPHYYHENTSMELLCNLHGWKLRESPRRVFDAALFS 119
Query: 96 NELDILEIRYGELLPYVDRFVILEANATFTGIPKSLSFLENINR-FAFAGSKIVYDMLPV 154
NE+D+L +R+ EL PY+ +FV+LE+N+TFTG+ K L+F +N + F F ++ Y +
Sbjct: 120 NEIDMLTLRWNELNPYITQFVLLESNSTFTGLSKQLAFADNREKNFKFVEPRLTYGNVG- 178
Query: 155 MEMDPGSHRQPFHVEAGHRRALNMLLRRSGIAVGDVLIMADADEIPSPETVQLLKWCDGI 214
G + PF E+ R AL+ L++ +GI D+LIM+D DEIPS T+ LL+WCDG
Sbjct: 179 GRFKKGEN--PFVEESFQRLALDQLIKLAGIKEDDLLIMSDVDEIPSGHTINLLRWCDGF 236
Query: 215 PQVMHLELKNYMYSFEFPIDYNSWRATAHVFT-EHTLYRHSRQSNLLLADAGWHCSFCFK 273
P ++HL+L+NY+YS+E+ +D SWRA+ H++ T H RQSN LL D+GWHCSFCF+
Sbjct: 237 PPILHLQLRNYLYSYEYYVDSKSWRASVHLYKPGKTRCAHFRQSNNLLTDSGWHCSFCFR 296
Query: 274 DIKEFAFKMKAYSHADRVKQDSFLNPDRIQRVICNGEDLFDMLPEEYTFKDLFKKMGPIP 333
I +F FKMKAYSH DRV+ +LNP RIQ +IC G DLFDMLPEE+TF+++ K+GPIP
Sbjct: 297 HINDFVFKMKAYSHTDRVRFLHYLNPRRIQDIICKGTDLFDMLPEEHTFREIIGKLGPIP 356
Query: 334 KSGSAVHLPSYLIKNADKFRFLLPGGCLR 362
+S SAVHLP YLI+NAD +++LLPG C R
Sbjct: 357 RSYSAVHLPGYLIQNADSYKYLLPGNCKR 385
>AT3G26445.1 | chr3:9680120-9680746 REVERSE LENGTH=119
Length = 118
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 186 AVGDVLIMADADEIPSPETVQLLKWCDGIPQVMHLELKNYMYSFEFPIDYNSWRATAHVF 245
+ D+LIM+D DEIPS TV LL+WC+ I Q+ HL LKN +YSFEF +D SWRA+ H F
Sbjct: 45 VLADLLIMSDVDEIPSRHTVNLLRWCNEITQIPHLRLKNSLYSFEFLLDNKSWRASVHRF 104
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.142 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,304,876
Number of extensions: 366047
Number of successful extensions: 1002
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 990
Number of HSP's successfully gapped: 7
Length of query: 364
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,364,969
Effective search space: 2208351816
Effective search space used: 2208351816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)