Os12g0610800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF588 family protein.
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Os12g0610800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF588 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.82 | 0.592 | 2.95 | -0.356 | 0.108 | -4.99 | -0.575 | 18.6 | 0.0346 | 5.81 | 0.1 | 30 | -- | -- |
| 166.86 | 0.606 | 2.99 | -0.438 | 0.082 | -0.115 | -0.53 | -- | 0.0439 | 6.59 | 0.1 | 30 | -- | -- |
| 162.5 | 0.594 | 2.95 | -0.364 | 0.114 | -4.82 | -- | 18.2 | 0.0385 | 7.28 | 0.1703 | 30 | -- | -- |
| 166.41 | 0.601 | 2.99 | -0.475 | 0.0845 | 0.73 | -- | -- | 0.0549 | 7.41 | 0.3577 | 18 | -- | -- |
| 163.18 | 0.595 | 2.95 | -0.364 | -- | -4.66 | -- | 17.6 | 0.0402 | -- | 0.118 | 30 | -- | -- |
| 166.88 | 0.606 | 2.99 | -0.44 | 0.0817 | -- | -0.531 | -- | 0.0442 | 6.58 | -- | -- | -- | -- |
| 167.56 | 0.606 | 2.99 | -0.448 | 0.0814 | -- | -- | -- | 0.0461 | 7.49 | -- | -- | -- | -- |
| 166.85 | 0.602 | 2.99 | -0.472 | -- | 0.672 | -- | -- | 0.0524 | -- | 0.3515 | 18 | -- | -- |
| 172.24 | 0.611 | 2.98 | -- | 0.0889 | 0.498 | -- | -- | 0.101 | 7.48 | 0.2027 | 18 | -- | -- |
| 167.92 | 0.606 | 2.99 | -0.446 | -- | -- | -- | -- | 0.0474 | -- | -- | -- | -- | -- |
| 172.85 | 0.615 | 2.98 | -- | 0.0778 | -- | -- | -- | 0.096 | 7.88 | -- | -- | -- | -- |
| 172.62 | 0.612 | 2.98 | -- | -- | 0.478 | -- | -- | 0.102 | -- | 0.2137 | 18 | -- | -- |
| 173.17 | 0.614 | 2.98 | -- | -- | -- | -- | -- | 0.0969 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.64 | radiation | 40.0 | 10 | < th | dose independent | sin | 13 | NA |
| 2 | 152.28 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 12 | 21 |
| 7 | 154.27 | radiation | 30.0 | 10 | > th | dose independent | rect. | 12 | 2 |
| 8 | 154.58 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 12 | 2 |
| 10 | 154.66 | radiation | 30.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 17 | 155.18 | radiation | 30.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 20 | 155.42 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 21 | 155.43 | humidity | 80.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 45 | 155.69 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 94 | 156.13 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 12 | 2 |
| 95 | 156.14 | temperature | 25.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 101 | 156.43 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 102 | 156.43 | radiation | 20.0 | 10 | > th | dose independent | rect. | 12 | 21 |
| 107 | 156.75 | wind | 3.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 110 | 156.84 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 1 |
| 111 | 156.85 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 130 | 156.91 | wind | 7.0 | 30 | > th | dose independent | rect. | 21 | 8 |
| 134 | 156.92 | wind | 7.0 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 139 | 156.93 | wind | 7.0 | 30 | > th | dose dependent | rect. | 21 | 8 |
| 154 | 156.95 | wind | 3.0 | 90 | > th | dose independent | rect. | 12 | 1 |
| 155 | 156.95 | wind | 7.0 | 30 | > th | dose independent | rect. | 21 | 5 |
| 159 | 156.95 | wind | 7.0 | 30 | > th | dose dependent | rect. | 21 | 5 |
| 185 | 157.02 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 1 |
| 187 | 157.02 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 212 | 157.16 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 21 | 1 |
| 223 | 157.16 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 21 | 1 |
| 233 | 157.22 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 18 | 13 |
| 237 | 157.31 | humidity | 50.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 238 | 157.33 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 240 | 157.34 | radiation | 30.0 | 10 | > th | dose dependent | sin | 13 | NA |
| 242 | 157.35 | humidity | 70.0 | 10 | < th | dose independent | rect. | 18 | 14 |
| 245 | 157.36 | humidity | 70.0 | 90 | < th | dose independent | rect. | 19 | 12 |
| 246 | 157.36 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 281 | 157.43 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 300 | 157.55 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 7 | 2 |
| 394 | 157.60 | humidity | 80.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 397 | 157.62 | radiation | 30.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 440 | 157.65 | humidity | 70.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 515 | 157.65 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 654 | 157.75 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 655 | 157.75 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 659 | 157.75 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 666 | 157.75 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 824 | 157.92 | temperature | 30.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 826 | 157.92 | humidity | 50.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 830 | 157.95 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 832 | 157.95 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 834 | 157.95 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 836 | 157.95 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 1 |
| 839 | 157.95 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 840 | 157.95 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 850 | 157.99 | wind | 9.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 871 | 158.02 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 913 | 158.08 | temperature | 30.0 | 10 | > th | dose independent | rect. | 12 | 5 |
| 916 | 158.09 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 13 | 23 |
| 917 | 158.09 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 940 | 158.24 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 948 | 158.31 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 963 | 158.46 | wind | 9.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 965 | 158.49 | radiation | 40.0 | 30 | > th | dose independent | sin | 14 | NA |
| 987 | 158.57 | wind | 7.0 | 30 | > th | dose independent | rect. | 18 | 4 |