BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0610800 Os12g0610800|AK073789
         (195 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0610800  Protein of unknown function DUF588 family protein   305   1e-83

>Os12g0610800 Protein of unknown function DUF588 family protein
          Length = 195

 Score =  305 bits (781), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/195 (78%), Positives = 153/195 (78%)

Query: 1   MDLEKGKKPSEQAAACRIMQVKDKLITLQPVVRACVFLATAVAAVIMGLNKQSYTTVVAI 60
           MDLEKGKKPSEQAAACRIMQVKDKLITLQPVVRACVFLATAVAAVIMGLNKQSYTTVVAI
Sbjct: 1   MDLEKGKKPSEQAAACRIMQVKDKLITLQPVVRACVFLATAVAAVIMGLNKQSYTTVVAI 60

Query: 61  VGTRPVTQTFTAKFKDTPXXXXXXXXXXXXSGYNLMVLVTRRILQRRAQSLSVHLLDMVI 120
           VGTRPVTQTFTAKFKDTP            SGYNLMVLVTRRILQRRAQSLSVHLLDMVI
Sbjct: 61  VGTRPVTQTFTAKFKDTPAFVFFVIANAIASGYNLMVLVTRRILQRRAQSLSVHLLDMVI 120

Query: 121 XXXXXXXXXXXXXXXQLGKNGNLHARWNPICDKFGSFCNHGGIALVSSFIGVXXXXXXXX 180
                          QLGKNGNLHARWNPICDKFGSFCNHGGIALVSSFIGV        
Sbjct: 121 LTLLATGSATAASMAQLGKNGNLHARWNPICDKFGSFCNHGGIALVSSFIGVALMLALNL 180

Query: 181 XXXXXXXPRSNVTGQ 195
                  PRSNVTGQ
Sbjct: 181 LSAAANSPRSNVTGQ 195



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,412,842
Number of extensions: 115844
Number of successful extensions: 265
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 100
Effective length of database: 12,075,471
Effective search space: 1207547100
Effective search space used: 1207547100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)