BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0610800 Os12g0610800|AK073789
(195 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G44550.1 | chr5:17942100-17943174 REVERSE LENGTH=198 103 5e-23
AT4G20390.1 | chr4:11007068-11007869 FORWARD LENGTH=198 102 2e-22
AT4G15630.1 | chr4:8917527-8918683 FORWARD LENGTH=191 57 8e-09
AT5G15290.1 | chr5:4967094-4967846 FORWARD LENGTH=188 49 1e-06
>AT5G44550.1 | chr5:17942100-17943174 REVERSE LENGTH=198
Length = 197
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
Query: 32 VRACVFLATAVAAVIMGLNKQSYTTVVAIVGTRPVTQTFTAKFKDTPXXXXXXXXXXXXS 91
+R F AT AA++MGLNK++ T +V VG P+ TFTAKF TP S
Sbjct: 22 LRLLAFSATLSAAIVMGLNKETKTFIVGKVGNTPIQATFTAKFDHTPAFVFFVVANAMVS 81
Query: 92 GYNLMVLVTRRILQRRAQS-----LSVHLLDMVIXXXXXXXXXXXXXXXQLGKNGNLHAR 146
+NL+ ++ +I + + LSV +LDM+ ++GKNGN HAR
Sbjct: 82 FHNLL-MIALQIFGGKMEFTGFRLLSVAILDMLNVTLISAAANAAAFMAEVGKNGNKHAR 140
Query: 147 WNPICDKFGSFCNHGGIALVSSFIGV 172
W+ ICD+F ++C+HG AL+++F GV
Sbjct: 141 WDKICDRFATYCDHGAGALIAAFAGV 166
>AT4G20390.1 | chr4:11007068-11007869 FORWARD LENGTH=198
Length = 197
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 32 VRACVFLATAVAAVIMGLNKQSYTTVVAIVGTRPVTQTFTAKFKDTPXXXXXXXXXXXXS 91
+R F+AT AA++M LNK++ T VVA +GT P+ T TAKF+ TP S
Sbjct: 22 LRIFAFMATLAAAIVMSLNKETKTLVVATIGTVPIKATLTAKFQHTPAFVFFVIANVMVS 81
Query: 92 GYNLMVLV----TRRILQRRAQSLSVHLLDMVIXXXXXXXXXXXXXXXQLGKNGNLHARW 147
+NL+++V +R++ + + LS+ +LDM+ +LGKNGN HA+W
Sbjct: 82 FHNLLMIVVQIFSRKLEYKGLRLLSIAILDMLNATLVSAAANAAVFVAELGKNGNKHAKW 141
Query: 148 NPICDKFGSFCNH 160
N +CD+F ++C+H
Sbjct: 142 NKVCDRFTTYCDH 154
>AT4G15630.1 | chr4:8917527-8918683 FORWARD LENGTH=191
Length = 190
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 16/174 (9%)
Query: 1 MDLEKGKKPSEQAAACRIMQVKDKLITLQPVVRACVFLATAVAAVIMGLNKQSYTTVVAI 60
M++EKGKK S L+ +R + T VAA ++G+ KQ+ + +
Sbjct: 12 MEMEKGKKESGSRKG------------LELTMRVLALVLTMVAATVLGVAKQTKVVPIKL 59
Query: 61 VGTRP-VTQTFTAKFKDTPXXXXXXXXXXXXSGYNLMVLVTRRILQ-RRAQSLSVHLL-- 116
+ T P + + TAK GY + +V I + +R++SL + +L
Sbjct: 60 IPTLPPLNVSTTAKASYLSAFVYNISANAIACGYTAISIVIVMISKGKRSKSLLMAVLIG 119
Query: 117 DMVIXXXXXXXXXXXXXXXQLGKNGNLHARWNPICDKFGSFCNHGGIALVSSFI 170
D+++ +G++GN H W +C FG FCN +++ + I
Sbjct: 120 DLMMVALLFSSTGAAGAIGLMGRHGNKHVMWKKVCGVFGKFCNQAAVSVAITLI 173
>AT5G15290.1 | chr5:4967094-4967846 FORWARD LENGTH=188
Length = 187
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 11/150 (7%)
Query: 24 KLITLQPVVRACVFLATAVAAVIMGLNKQSYTTVVAIVGTRPVTQTFTAKFKDTPXXXXX 83
++ L+ ++R F T +A++MG ++ + F A++ D P
Sbjct: 24 RIAILEFILRIVAFFNTIGSAILMGTTHETLPFFTQFI-------RFQAEYNDLPALTFF 76
Query: 84 XXXXXXXSGYNLMVLVTR--RILQRRAQSLSVHL--LDMVIXXXXXXXXXXXXXXXQLGK 139
SGY ++ L I++R+ Q+ + L LD+ + L
Sbjct: 77 VVANAVVSGYLILSLTLAFVHIVKRKTQNTRILLIILDVAMLGLLTSGASSAAAIVYLAH 136
Query: 140 NGNLHARWNPICDKFGSFCNHGGIALVSSF 169
NGN W IC +F SFC +L+ SF
Sbjct: 137 NGNNKTNWFAICQQFNSFCERISGSLIGSF 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,877,090
Number of extensions: 77922
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 4
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)